Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq19922 140 3e-28 seq102 116 4e-21 >seq19922 Length=1369 Score = 140 bits (154), Expect = 3e-28 Identities = 367/551 (67%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 16955 AACATCAG-ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGA 17013 ||||| || ||| || ||||||||||| | ||||||||| | | ||| || || || || Sbjct 1226 AACATAAGCACA-GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGA 1168 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073 || || | |||||||| || || ||||| | ||| || |||| || || || Sbjct 1167 GAAGGTAAGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCC 1108 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GT 17132 ||||| || || ||||| | ||||| || || | || ||| | | | || | Sbjct 1107 GCTGAAGAAGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGC 1048 Query 17133 CTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 ||| | | || ||||| | | |||| || || || |||| | ||||||| Sbjct 1047 CTTCG--AGGAGATCCAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTT 990 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || ||||| || || | | || | || | || || || || |||||||| Sbjct 989 TCAATGGCATTGAAGAGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGC 930 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | |||||||||||| ||||| | ||||||||||| ||||| || || |||||||| || Sbjct 929 ACGCTGTACATTTCCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGT 870 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | ||||| |||||| | ||| || || | ||||| || || || |||||| Sbjct 869 GCCTCTGTGATTTGCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCG 810 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || ||||| || || ||||| | ||| |||||| | || | ||| || Sbjct 809 TCAGAGGCGGCAAAGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAG- 751 Query 17432 ACGCG-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 || | |||||| | | || ||||||| ||||||||| || |||||| || ||| Sbjct 750 TCGAGCCCAGTCGGTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGC 691 Query 17491 CACTGCCTTTT 17501 | ||||||| Sbjct 690 TTCGGCCTTTT 680 >seq102 Length=36553 Score = 116 bits (128), Expect = 4e-21 Identities = 201/284 (71%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841 ||||| ||||||||||| || || | | || |||||||| || ||| || || | || Sbjct 12800 TTCATGTATCGTATCTTGCCAAAGATGTCGCGCTCCTTCCA-GCCCTGATCATGAACGCC 12858 Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTT 119901 | || | ||| | ||| || ||||| || ||||||||| |||||| | ||| || Sbjct 12859 ACCAACTGACCACATGCAGCCGACGTACCCATTGGGATCCCGTCCATCCAGGCTGTACTT 12918 Query 119902 ATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959 ||| || | |||| || ||| || | ||||| || |||||||| |||| || || Sbjct 12919 ATCATTGA-GTAGTATGCAGTACTCC-AACGCCTGCTCGGGAGTCTCAGTCCACTCGAGA 12976 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGA 120019 ||||| || ||||||||||| || | | |||| ||||| || || || | |||| ||| Sbjct 12977 ATTTTCTTCGCCCAGTACATGCGCAGGAATCCGTGCATCTTGCCCTCCCTGACCAGTTGC 13036 Query 120020 AGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGTTC 120063 | ||||| | |||||| | | |||| || |||| ||||| Sbjct 13037 AACTGTGCAGAGTTCCACAGGTCGTCGTAGGTGCGGGACTGTTC 13080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517234639195560