Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2144 473 1e-128 seq19922 161 1e-34 >seq2144 Length=13752 Score = 473 bits (524), Expect = 1e-128 Identities = 1246/1887 (66%), Gaps = 36/1887 (2%) Strand=Plus/Minus Query 52795 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 52854 || ||| || | || || ||||| | | || ||| || || || || ||||| ||||| Sbjct 4935 ATTCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACAT 4876 Query 52855 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACT 52914 ||| ||||| ||||| |||| | | ||||| || ||| || || |||| | Sbjct 4875 TCCTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATT 4816 Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 || || |||| ||| ||||| | |||||||||||||| ||||| ||||| | ||||| Sbjct 4815 TGGTTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTT 53031 |||||||| || | | |||| | |||||||||| || ||||| | | ||| Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC-- 4698 Query 53032 AATATCTTCTGGAAGGTTT---GTATTCTGAATAGATCCACCATCTACCATAATCCTATT 53088 | || || |||| |||| | || || || || |||| | | | || || ||| Sbjct 4697 -ACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATT 4639 Query 53089 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148 || || ||||||| ||| || | ||||||| | | | | | ||| |||| || Sbjct 4638 TTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCAC 4579 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 || ||||| |||||||||| |||| | ||||| || || || || ||||| | Sbjct 4578 AACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAA 4519 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||| |||||||| |||| || || || || ||||| || ||||| ||||| | | | Sbjct 4518 AGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAG 4459 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTT--CCCAATTCCAAAGA 53326 | ||| | | |||| | || || || || || ||| || |||| | ||| ||| Sbjct 4458 AGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTT--GAGTTTCGCCCAGTCCCAGAGA 4401 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385 | | ||||| || |||||||| || || | | || ||| Sbjct 4400 TTTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGAC-TTCC 4342 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 |||| || || || | || || |||||||| || ||||| || || || ||||| || Sbjct 4341 CTCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCC 4282 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGG 53505 || |||||||||||||| |||| | ||| ||| || | || ||| | || Sbjct 4281 ATAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGG 4222 Query 53506 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 ||| | | ||| || || ||||| | ||||||||| ||||| || || || | ||| Sbjct 4221 ATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATG 4162 Query 53566 TCTCTTATTAGAGATTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 ||| | | | | |||||| ||| || || | ||| || ||||| ||||| || || || Sbjct 4161 TCT-TAAGTTG-GATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTG 4104 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTG 53679 || | |||| || || | ||| || || || || || | ||| || | || Sbjct 4103 TTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTC 4044 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 ||| | |||| ||||| || | || || ||||||| ||| ||||| || | ||||| Sbjct 4043 TCC-GGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATC 3985 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | ||| | | || |||||||| | ||||| || || || || || | ||| Sbjct 3984 TGGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATT 3925 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 |||||| || ||||| |||||||| |||||| | || ||| | || || ||||| || Sbjct 3924 TTGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTC 3865 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATC 53918 | || || || || || || ||| | | ||||||| || | | |||||| | Sbjct 3864 CACTTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTG---C 3808 Query 53919 TCTTTTCTC--TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 || ||| | |||||| |||||| | ||||||| || |||||||||| | Sbjct 3807 TCGACCCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGC 3748 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 | ||| ||||| | | ||| ||||||| ||||| || | | | | ||| || || Sbjct 3747 GAGTCCTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTT 3688 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 54095 |||||| | ||| || ||||| || || ||| || ||||| | | | ||||||||| | Sbjct 3687 CATAAACAAATCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTT 3629 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | || || ||||| |||||||| | |||| | | | ||| |||||||| || || | || Sbjct 3628 TGCCAGTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGT 3569 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | ||||||| | |||| || |||||||| | || | || || | Sbjct 3568 AAATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGT 3509 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 || | ||||||| ||| |||| | |||||||||| ||||||||| || || | Sbjct 3508 TAAATACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAG 3449 Query 54276 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 |||| |||| ||||| | | | ||| ||||| || || ||||| || ||||| Sbjct 3448 TTCCCTTGGCCCGAATGCAATGCACATT--CAGACCAATACCACCTGCTGACTTTGAGAT 3391 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 | || || | | | | | | |||| ||||| || ||| | |||| | || Sbjct 3390 CATCGCACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAG 3331 Query 54394 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 54453 ||||| || ||||| || | || | ||| | || || | || || || || Sbjct 3330 GAGAAAGCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGC 3271 Query 54454 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCA 54513 || || || | ||| ||||| | |||||| ||||| | || || || ||||| Sbjct 3270 ATGTGTGAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATC 3211 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||| || || | || || ||||| | ||||||||| || | |||| | | ||| Sbjct 3210 TCCATGTATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCC 3151 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 || ||||| | ||| || ||| |||||||| || || |||||||| || || ||| Sbjct 3150 ATTGATTTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAA 3091 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTT 54660 || || ||||| ||||| | ||||| Sbjct 3090 ATCACGATCGTATATAATGGCAGAGTT 3064 >seq19922 Length=1369 Score = 161 bits (178), Expect = 1e-34 Identities = 358/535 (67%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || |||||||| || || |||||||| | || | || || || || || || ||| Sbjct 1214 GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCG 1155 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || |||||||| || ||||| || || |||||||| || ||||| || Sbjct 1154 GGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATG 1095 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGTA--TC 24314 ||||| || || ||||||||||| | | || ||| | || || || | | || Sbjct 1094 CCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGATC 1035 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || |||||||||| ||||| || ||| ||||| || || || ||||| ||| Sbjct 1034 CAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAG 975 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 || |||| | || ||| || || || || || | | || ||||||||| Sbjct 974 AGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCC 915 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 || || | || || ||||| || || || || || || || | ||||| || || || Sbjct 914 GAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGC 855 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 ||||| | || || || | | ||| ||||| || || |||||| ||| ||||| Sbjct 854 ACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAG 795 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || ||||| |||||| || || | || | ||||||| | ||| || | Sbjct 794 AAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTC 735 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 || || || |||| ||||||||| ||||| ||||| ||||| || || ||||||| Sbjct 734 ATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593364869798160