Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq42801 150 2e-31
seq2274 107 2e-18
seq9950 98.7 8e-16
seq355 86.0 5e-12
seq1658 84.2 2e-11
>seq42801
Length=1186
Score = 150 bits (166), Expect = 2e-31
Identities = 374/565 (66%), Gaps = 7/565 (1%)
Strand=Plus/Minus
Query 102071 ATTTGGCGGTAATCGACGACCCCGTTTTCCCAGGTGCCGGGCACGGGGCCGTCGGCCGTG 102130
|| |||||||| || |||| ||||| ||||||||||| || || ||| ||| |||
Sbjct 564 ATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTG 505
Query 102131 CCCGAGAAATATTTGTCGCCGGCGTAGCCTGACACGCCCGTCCACCCGCGGCCGTACATG 102190
|| | ||| ||| | |||||| ||| || ||||| |||||||| ||||||
Sbjct 504 CCGGTGAACGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATG 445
Query 102191 GCGACGCCCACGATGAGTTTGTGGGCCGCTACGCCTTGGCCCGTGAGCAACTTCACGGCG 102250
||| ||| |||| || ||| | | ||||| || || ||| |||||| ||
Sbjct 444 GCGGTGCCGACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAGCAGCGCATTCACGCCG 385
Query 102251 TGGTCGGTGGTGTACAGCTCGTTGGCGTTCCAACTGGGCGCGTACAGCGTGGTCTGGTAG 102310
| | |||||||| || | |||| ||||| | ||||| |||||| |
Sbjct 384 TTCACCGTGGTGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGC 325
Query 102311 CCCAAATCCGT--GTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTAT 102368
|||| | | | | || | ||||| | || ||||| ||||| ||||| || | |
Sbjct 324 CCCAGGTTTTTCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAA 267
Query 102369 CAAGGAACCTTTGAGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAA 102428
| | | | || || ||| ||| |||| | | || ||||| | ||| | || |
Sbjct 266 CCATCGAGATCTGCGCGACGTTGTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGA 207
Query 102429 TCGCGCTCGTCAGCTCGTACGTCTTGTTCGTTTGCAGCTGCAGTTCGTCCAGCATGGCGC 102488
| ||| |||||||| ||| | | |||| | | ||| | |||||||| || |
Sbjct 206 TGGCGGAGGTCAGCTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGCATCGCCC 147
Query 102489 GCAACTCTTTCAGCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCG 102548
||| ||||||| || | | || || || |||| | || |||| || ||
Sbjct 146 GCAGTTCTTTCATCAGCAGCACATAAGTTTCCCCGTCCTGAGGGC---TGCCCAGATTCG 90
Query 102549 GGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCC 102608
|||||||||| ||||||||||| || ||||| ||||| ||||| |||||||| |||||||
Sbjct 89 GGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCC 30
Query 102609 ACACCTGCAAAAACTCTTTAACGGA 102633
| ||||| |||||||| || ||
Sbjct 29 AGGTCTGCAGGAACTCTTTCACCGA 5
>seq2274
Length=37031
Score = 107 bits (118), Expect = 2e-18
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | || |||||||| || ||||| ||||| |
Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||||||||| ||||| || | || || | |||||| || ||
Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | |||||| ||||||
Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTT 21187
|||| ||| ||||||||||| || || || ||||| || || ||||||||| | || ||
Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATTTTGGACCTGTT 30147
>seq9950
Length=6309
Score = 98.7 bits (108), Expect = 8e-16
Identities = 142/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 29095 CCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTC 29154
|||| | || || |||| ||| ||| |||||| | ||||||||||| ||||||||| |
Sbjct 3486 CCAGAGTGCATGCTGCTCCCATGGCTCGTCGTTGTTGTCCCAATCCTTGAGACCGCCGCC 3427
Query 29155 GCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAA 29214
||||| || || ||| || || |||| ||| ||||| || |||||||| |
Sbjct 3426 GCAGCTGAAACAACGCACACGATCCCCGACGCCACAGTAGAAGAAACCCGCCTCGGCGAG 3367
Query 29215 CTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGC 29274
|| |||||| |||||||| | ||| ||||| ||| || |||| | ||| || |
Sbjct 3366 CTGTTCGGGACGCTGTTTTAGATGGCGTGGCCATTCCTGGAAACTGCGAAGACGAGCCGT 3307
Query 29275 TTCCGTGGCATACTGCGGG 29293
|| ||||||||| ||||
Sbjct 3306 CTCGATGGCATACT-CGGG 3289
>seq355
Length=9390
Score = 86.0 bits (94), Expect = 5e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047
|| || ||||| ||||||| ||| || || | ||||||||||| || || || ||||
Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331
Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107
|| | |||||| || ||| | || |||||||| ||| || ||||| | |
Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271
Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167
| || || || || ||||| || ||||||||||| || || ||||| |||||
Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211
Query 21168 ATTTGCATTTTGAAT 21182
|| |||||||| |||
Sbjct 9210 ATCTGCATTTTCAAT 9196
>seq1658
Length=5168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 29060 CCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGC 29119
|||||| | ||| |||||| ||| || ||||||| || || |||| ||| ||
Sbjct 367 CCCTTGGCCAGCTTAACGTACCGACAGTGGCTAAACCAGCGTGCATGCTGCTCCCAAGGT 308
Query 29120 GCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCG 29179
|||||| | |||||||||||||| |||||| |||| | || || ||| |||
Sbjct 307 TCGTCGTTGTTTTCCCAATCCTTCAAACCGCCACCGCAACTGAAACAGCGCACACGATCG 248
Query 29180 CCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCG 29239
|| |||| || ||||| || ||||| || | || |||||| |||||||| |
Sbjct 247 CCGGTGCCACAATAGAAGAACCCCGCCTCAGCGAGCTGTTCGGGGCGCTGTTTATGATTG 188
Query 29240 CGGGGCCACTCCGCAAAGGTGCGCAAACG 29268
||||| ||| ||||||| ||| |||
Sbjct 187 TCTGGCCATTCCTCAAAGGTATGCAGACG 159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422011833566972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |