Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq42801 150 2e-31 seq2274 107 2e-18 seq9950 98.7 8e-16 seq355 86.0 5e-12 seq1658 84.2 2e-11 >seq42801 Length=1186 Score = 150 bits (166), Expect = 2e-31 Identities = 374/565 (66%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 102071 ATTTGGCGGTAATCGACGACCCCGTTTTCCCAGGTGCCGGGCACGGGGCCGTCGGCCGTG 102130 || |||||||| || |||| ||||| ||||||||||| || || ||| ||| ||| Sbjct 564 ATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTG 505 Query 102131 CCCGAGAAATATTTGTCGCCGGCGTAGCCTGACACGCCCGTCCACCCGCGGCCGTACATG 102190 || | ||| ||| | |||||| ||| || ||||| |||||||| |||||| Sbjct 504 CCGGTGAACGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATG 445 Query 102191 GCGACGCCCACGATGAGTTTGTGGGCCGCTACGCCTTGGCCCGTGAGCAACTTCACGGCG 102250 ||| ||| |||| || ||| | | ||||| || || ||| |||||| || Sbjct 444 GCGGTGCCGACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAGCAGCGCATTCACGCCG 385 Query 102251 TGGTCGGTGGTGTACAGCTCGTTGGCGTTCCAACTGGGCGCGTACAGCGTGGTCTGGTAG 102310 | | |||||||| || | |||| ||||| | ||||| |||||| | Sbjct 384 TTCACCGTGGTGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGC 325 Query 102311 CCCAAATCCGT--GTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTAT 102368 |||| | | | | || | ||||| | || ||||| ||||| ||||| || | | Sbjct 324 CCCAGGTTTTTCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAA 267 Query 102369 CAAGGAACCTTTGAGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAA 102428 | | | | || || ||| ||| |||| | | || ||||| | ||| | || | Sbjct 266 CCATCGAGATCTGCGCGACGTTGTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGA 207 Query 102429 TCGCGCTCGTCAGCTCGTACGTCTTGTTCGTTTGCAGCTGCAGTTCGTCCAGCATGGCGC 102488 | ||| |||||||| ||| | | |||| | | ||| | |||||||| || | Sbjct 206 TGGCGGAGGTCAGCTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGCATCGCCC 147 Query 102489 GCAACTCTTTCAGCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCG 102548 ||| ||||||| || | | || || || |||| | || |||| || || Sbjct 146 GCAGTTCTTTCATCAGCAGCACATAAGTTTCCCCGTCCTGAGGGC---TGCCCAGATTCG 90 Query 102549 GGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCC 102608 |||||||||| ||||||||||| || ||||| ||||| ||||| |||||||| ||||||| Sbjct 89 GGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCC 30 Query 102609 ACACCTGCAAAAACTCTTTAACGGA 102633 | ||||| |||||||| || || Sbjct 29 AGGTCTGCAGGAACTCTTTCACCGA 5 >seq2274 Length=37031 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || ||||| ||||| | Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| ||||| || | || || | |||||| || || Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | |||||| |||||| Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTT 21187 |||| ||| ||||||||||| || || || ||||| || || ||||||||| | || || Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATTTTGGACCTGTT 30147 >seq9950 Length=6309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 29095 CCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTC 29154 |||| | || || |||| ||| ||| |||||| | ||||||||||| ||||||||| | Sbjct 3486 CCAGAGTGCATGCTGCTCCCATGGCTCGTCGTTGTTGTCCCAATCCTTGAGACCGCCGCC 3427 Query 29155 GCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAA 29214 ||||| || || ||| || || |||| ||| ||||| || |||||||| | Sbjct 3426 GCAGCTGAAACAACGCACACGATCCCCGACGCCACAGTAGAAGAAACCCGCCTCGGCGAG 3367 Query 29215 CTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGC 29274 || |||||| |||||||| | ||| ||||| ||| || |||| | ||| || | Sbjct 3366 CTGTTCGGGACGCTGTTTTAGATGGCGTGGCCATTCCTGGAAACTGCGAAGACGAGCCGT 3307 Query 29275 TTCCGTGGCATACTGCGGG 29293 || ||||||||| |||| Sbjct 3306 CTCGATGGCATACT-CGGG 3289 >seq355 Length=9390 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || ||||| ||||||| ||| || || | ||||||||||| || || || |||| Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 || | |||||| || ||| | || |||||||| ||| || ||||| | | Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | || || || || ||||| || ||||||||||| || || ||||| ||||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 21168 ATTTGCATTTTGAAT 21182 || |||||||| ||| Sbjct 9210 ATCTGCATTTTCAAT 9196 >seq1658 Length=5168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29060 CCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGC 29119 |||||| | ||| |||||| ||| || ||||||| || || |||| ||| || Sbjct 367 CCCTTGGCCAGCTTAACGTACCGACAGTGGCTAAACCAGCGTGCATGCTGCTCCCAAGGT 308 Query 29120 GCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCG 29179 |||||| | |||||||||||||| |||||| |||| | || || ||| ||| Sbjct 307 TCGTCGTTGTTTTCCCAATCCTTCAAACCGCCACCGCAACTGAAACAGCGCACACGATCG 248 Query 29180 CCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCG 29239 || |||| || ||||| || ||||| || | || |||||| |||||||| | Sbjct 247 CCGGTGCCACAATAGAAGAACCCCGCCTCAGCGAGCTGTTCGGGGCGCTGTTTATGATTG 188 Query 29240 CGGGGCCACTCCGCAAAGGTGCGCAAACG 29268 ||||| ||| ||||||| ||| ||| Sbjct 187 TCTGGCCATTCCTCAAAGGTATGCAGACG 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422011833566972