Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19922 325 4e-84 seq42801 224 1e-53 seq2274 109 6e-19 seq355 105 7e-18 >seq19922 Length=1369 Score = 325 bits (360), Expect = 4e-84 Identities = 462/647 (71%), Gaps = 2/647 (0%) Strand=Plus/Plus Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCG 116711 |||||||||| || || ||||||||||| ||||| ||||| || |||||||||| || || Sbjct 680 AAAAGGCCGAAGCTTCATTCTGGACCGTGGAGGAAGTGGATCTATCCAAGGACATGACCG 739 Query 116712 ACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||||| || | | ||||| ||||| || ||||| || || |||| || || | Sbjct 740 ACTGGGCTCGACTAACAGACAATGAGCGTCACTTCATTTCACATGTTTTGGCTTTCTTTG 799 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 ||||| |||||||| || || |||||||| |||||||| ||| ||||| ||||| Sbjct 800 CCGCCTCTGACGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAAGTGCAAA 859 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | | ||||| || ||||| || ||||| ||||| ||||||||||| || |||||||||| Sbjct 860 TCACAGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAAA 919 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 |||| ||||||||||| ||| | || | || | || | | || | Sbjct 920 TGTACAGCGTGCTCATCGACACTTACATTCGGGATCCGCATCAGCGCGACTACCTCTTCA 979 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 | ||||| || |||||||| || || ||||| || ||||| ||| |||||| Sbjct 980 ATGCCATTGAAACGATGCCCGCTGTGAAGCGTAAGGCAGATTGGGCTCTGTCTTGGATCT 1039 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 || | | ||| ||| ||||||||| | | ||||| || || ||||| ||| ||| Sbjct 1040 CCTCGAAGGCGGCAAACTTTGGCGAGCGCATCATTGCCTTTGCTGCTGTCGAAGGCATCT 1099 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| |||||||| || | || || ||||| ||||| || || || |||||||| | Sbjct 1100 TCTTCAGCGGCAGTTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTC 1159 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT- 117190 | || ||| || ||||| |||||| | |||||||| || |||||||| |||| |||| Sbjct 1160 TTACCTTCTCGAATGAGCTGATCTCCCGCGACGAGGGACTTCATTGCGATTTTG-CTGTG 1218 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 | ||||| |||| ||||| ||||| || || | |||| ||| |||||| || | Sbjct 1219 CTTATGTTCCAGCACTTGGTACAGCGTCCCAGTCGTGAGCGCATCATCGAGATCATCTCG 1278 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGT 117297 || || || || |||||| ||||| || || || || || || Sbjct 1279 GATGCTGTGAAGATAGAGCAGGAATTCCTTACAGACGCTCTACCAGT 1325 >seq42801 Length=1186 Score = 224 bits (248), Expect = 1e-53 Identities = 520/786 (66%), Gaps = 21/786 (3%) Strand=Plus/Minus Query 64831 CAGGCCGGCGTGCATGGCGTTCAGCAGGTCGCCGTTGTCGGCGTCGATCTCCCACGCGAA 64890 ||||| ||||| |||| ||| || | ||||||||||| |||||||||||||| | ||| Sbjct 787 CAGGCTGGCGTTCATGCTGTTGAGAATATCGCCGTTGTCCGCGTCGATCTCCCAGGAGAA 728 Query 64891 CAGACCGCCCAGCCCGAGCTCGCGCGCGTACTTTCCCTTGTCGAGTATCGATTCGGCGCT 64950 || ||||||||| || | ||||||| || ||| | | ||| ||| Sbjct 727 TAGGCCGCCCAGCTGCTTATCCAACACGTACTTGCCTTTGGCCTGCCCCGAGCGGGCATC 668 Query 64951 GTCGAAGGACACCAGCGCGCCCGCCGTCTCGTCGAAAGCGTACGCGCCTTTGGCCGTCGA 65010 ||| |||| | ||| |||| | || | ||| |||| | ||| ||||| | Sbjct 667 GTCAAAGGTGATCAGATCGCCGGTGGTAGGTTTGAACACGTAAGGCGCTTCCGCCGTGGC 608 Query 65011 GTCGTACGCGTAGGCGTAGCGGCCGCCGTCGA--TGGCGGCGCGCAGCTCGCGGTAGTCG 65068 |||||| | ||| | ||||| || |||| | ||| | || ||||||||| Sbjct 607 GTCGTAGGTGTACTGCCACTCGCCGCTCATGAACTGGCTG-GCG-ATCTGGCGGTAGTCC 550 Query 65069 ACCACGCCGTCCTCCCACGTGCCCGGCACNNNNNNNNNNNNNNNNNNNNNGAACGGGTTG 65128 || | ||||| |||||| ||||| || |||||| || Sbjct 549 ACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTGCCGGTGAACGGAATG 490 Query 65129 CCGTCCGCGTAGCCGGTCACGCCGGTCCAGCCGCGCCCGTACATGGCCACGCCGAGCACG 65188 || | ||||||| |||| |||||||| ||||| || |||||||| ||||| ||| Sbjct 489 TTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATGGCGGTGCCGACGACG 430 Query 65189 ATCTTGTC-GGCGGGCGCGCCCTGCGCCAACAGCCGGCGCAC-CGCGCCGT---CGGCGG 65243 |||||| | ||| | |||||||||||| |||| ||| | |||||| | | || Sbjct 429 ATCTTGCCCGGCTTGA-CGCCCTGCGCCAGCAGC----GCATTCACGCCGTTCACCGTGG 375 Query 65244 TGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCCCAGCTCGG 65303 |||||| ||| || || | |||||| | |||||||||||| || ||||| | Sbjct 374 TGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGCCCCAGGTTTT 315 Query 65304 T--GGTGGACCACGCCCCCTTGAAGTCGTAGCTCATCAAAAAGATGCGGTCGAGCGAGCG 65361 | | | || | || || | ||||||||||||||||| |||||| | | | |||| Sbjct 314 TCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAACCATCGAGAT 257 Query 65362 GTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGCGCTGGT 65421 |||||| ||| |||| | |||||||||| | |||||||| ||||||| ||| Sbjct 256 CTGCGCGACGTTGTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGATGGCGGAGGT 197 Query 65422 CAGCTCGTACGTCCTGTTGGTCTCGGCCTGCAGCTCGTCGAGCATGAGCNNNNNNNNNNN 65481 |||||| ||| | | | ||| || ||| ||||| || ||||| | Sbjct 196 CAGCTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGCATCGCCCGCAGTTCTTT 137 Query 65482 NNNNNNNNNCGCGTACGTTTCGCGGTCGCGCTCCGCGTCGCCCAGCAGCGGGTTGGCGCC 65541 | | || ||||| | ||| || | | |||||| |||||||||||| Sbjct 136 CATCAGCAGCACATAAGTTTCCCCGTC---CTGAGGGCTGCCCAGATTCGGGTTGGCGCC 80 Query 65542 CTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTCCACGTCTGCAG 65601 ||||||||||| || |||||||| | |||| ||||||||| | |||||| |||||||| Sbjct 79 TTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCCAGGTCTGCAG 20 Query 65602 AAACTC 65607 ||||| Sbjct 19 GAACTC 14 >seq2274 Length=37031 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 30156 AAAATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCC 30214 Query 40747 ACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | || | | | | | |||||| || || | ||||| ||||| || || | || Sbjct 30215 ATCTGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCAGA 30274 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||| Sbjct 30275 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTA 30334 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 30335 CAACATCCAGAAGGAGTCAACCCTCCA 30361 >seq355 Length=9390 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| | || ||||| |||||||| | || || ||| | Sbjct 9200 AAAATGCAGATCTTTGTGAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCT 9259 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | |||| ||||| | ||||| ||||| |||||| | || Sbjct 9260 TCCGACACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGTATCCCCCCAGAT 9319 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||| | ||| || || |||||||| || | || || || |||||| Sbjct 9320 CAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACTCTGTCGGACTAC 9379 Query 40867 AACATCCAGAA 40877 ||||||||||| Sbjct 9380 AACATCCAGAA 9390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514909636983920