Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq2274 109 4e-19
seq42801 96.9 3e-15
seq355 87.8 1e-12
>seq2274
Length=37031
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| ||||||||||| || |||| | || |||
Sbjct 30367 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCC 30308
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| || || ||||| | |||||||||||||
Sbjct 30307 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 30248
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||||||||||| ||| || ||||||
Sbjct 30247 ATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCTTG 30188
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| |||| ||||| || || || ||||| |||
Sbjct 30187 CCAGTCAAGGTCTTGACGAAAATCTGCATTTTG 30155
>seq42801
Length=1186
Score = 96.9 bits (106), Expect = 3e-15
Identities = 365/563 (65%), Gaps = 21/563 (4%)
Strand=Plus/Minus
Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430
|||| | ||||||||| | || | |||||| |||||||| || || || ||
Sbjct 564 ATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTG 505
Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490
|| | ||| || |||||||| ||| |||| || | ||| || | ||| |||||
Sbjct 504 CCGGTGAACGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATG 445
Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACGCA 6550
|| || || || | |||||| || || | ||| || || ||| | ||||
Sbjct 444 GCGGTGCCGACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAGCAG-CGCATTCACGCC 386
Query 6551 AAGT---CTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGG 6607
|| | ||||||||| || | ||||| | ||| | || ||| | | ||
Sbjct 385 --GTTCACCGTGGTGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGA 328
Query 6608 TAGCCCAGATCCGTCA--TCGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGT 6665
| ||||| | ||| |||| | || || | | | |||||| |||||| ||| ||||
Sbjct 327 TGCCCCAGGTTTTTCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGT 270
Query 6666 AG----TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCA 6721
||||||| ||| | || ||||| | ||| ||| |||||||| | ||
Sbjct 269 GAACCATCGAGAT-CTGCGCG-ACG--TTGTATGCCACCTTGTCGATCTTGTCCTTGCCG 214
Query 6722 CCGCTGATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAAC 6781
||||||||||| |||| || | | ||||| || | | || ||||| |||| |
Sbjct 213 GCGCTGATGGCGGAGGTCAGCTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGC 154
Query 6782 ATTTGTCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTGTCAGCATCGCCC 6841
|| | || || ||| |||| | ||||| || | | ||| | || ||||
Sbjct 153 ATCGCCCGCAGTTCTTTCATCAGCAGCACATAAGTTTCCCCGTC---CTGAGGGCTGCCC 97
Query 6842 AACTTGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAA 6901
| || ||| || || || || ||||| || |||||||| |||||||| ||||||||
Sbjct 96 AGATTCGGGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAG 37
Query 6902 AACTTCCACGTCTCCAGAAACTC 6924
|||||||| |||| ||| |||||
Sbjct 36 AACTTCCAGGTCTGCAGGAACTC 14
>seq355
Length=9390
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208
||||| ||||||||||| ||| || | || ||||| || ||||||||||| ||
Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331
Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268
| ||||| || || || || | |||||||||||| ||||| ||| || | |
Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271
Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328
| | |||| | || || |||| || || |||||||| |||| || |||||||||
Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211
Query 45329 ATTTGCATGTT 45339
|| ||||| ||
Sbjct 9210 ATCTGCATTTT 9200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394843758404407
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |