Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2274 109 4e-19 seq42801 96.9 3e-15 seq355 87.8 1e-12 >seq2274 Length=37031 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || |||| | || ||| Sbjct 30367 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCC 30308 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| || || ||||| | ||||||||||||| Sbjct 30307 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 30248 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||||||||||| ||| || |||||| Sbjct 30247 ATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCTTG 30188 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| ||||| || || || ||||| ||| Sbjct 30187 CCAGTCAAGGTCTTGACGAAAATCTGCATTTTG 30155 >seq42801 Length=1186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 365/563 (65%), Gaps = 21/563 (4%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 |||| | ||||||||| | || | |||||| |||||||| || || || || Sbjct 564 ATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTG 505 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490 || | ||| || |||||||| ||| |||| || | ||| || | ||| ||||| Sbjct 504 CCGGTGAACGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATG 445 Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACGCA 6550 || || || || | |||||| || || | ||| || || ||| | |||| Sbjct 444 GCGGTGCCGACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAGCAG-CGCATTCACGCC 386 Query 6551 AAGT---CTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGG 6607 || | ||||||||| || | ||||| | ||| | || ||| | | || Sbjct 385 --GTTCACCGTGGTGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGA 328 Query 6608 TAGCCCAGATCCGTCA--TCGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGT 6665 | ||||| | ||| |||| | || || | | | |||||| |||||| ||| |||| Sbjct 327 TGCCCCAGGTTTTTCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGT 270 Query 6666 AG----TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCA 6721 ||||||| ||| | || ||||| | ||| ||| |||||||| | || Sbjct 269 GAACCATCGAGAT-CTGCGCG-ACG--TTGTATGCCACCTTGTCGATCTTGTCCTTGCCG 214 Query 6722 CCGCTGATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAAC 6781 ||||||||||| |||| || | | ||||| || | | || ||||| |||| | Sbjct 213 GCGCTGATGGCGGAGGTCAGCTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGC 154 Query 6782 ATTTGTCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTGTCAGCATCGCCC 6841 || | || || ||| |||| | ||||| || | | ||| | || |||| Sbjct 153 ATCGCCCGCAGTTCTTTCATCAGCAGCACATAAGTTTCCCCGTC---CTGAGGGCTGCCC 97 Query 6842 AACTTGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAA 6901 | || ||| || || || || ||||| || |||||||| |||||||| |||||||| Sbjct 96 AGATTCGGGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAG 37 Query 6902 AACTTCCACGTCTCCAGAAACTC 6924 |||||||| |||| ||| ||||| Sbjct 36 AACTTCCAGGTCTGCAGGAACTC 14 >seq355 Length=9390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| ||||||||||| ||| || | || ||||| || ||||||||||| || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | ||||| || || || || | |||||||||||| ||||| ||| || | | Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| | || || |||| || || |||||||| |||| || ||||||||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 45329 ATTTGCATGTT 45339 || ||||| || Sbjct 9210 ATCTGCATTTT 9200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394843758404407