Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2144 556 1e-153 seq19922 192 5e-44 seq2274 91.5 1e-13 >seq2144 Length=13752 Score = 556 bits (616), Expect = 1e-153 Identities = 1273/1901 (67%), Gaps = 47/1901 (2%) Strand=Plus/Minus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 |||| || || |||||||| || || || || ||||| || ||||||||||||||||| | Sbjct 4933 TCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTC 4874 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | || || |||||| ||||| | | | ||||| || || |||| || |||||| | | Sbjct 4873 CTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATTTG 4814 Query 22224 G--CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 | || | |||| | | || || || ||||| ||||| || || ||||| ||||| || Sbjct 4813 GTTCAGCTACATGAATA--TTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 22282 GGCCATATTTATC----AATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337 ||||| || || | | |||| || |||||||| |||||||| || |||| | Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGAT----ATTTCCCAAACGGTCTTATATAGTTCAC 4700 Query 22338 TGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA-TTGTGTATGATCAAA 22396 | | | || || |||||| | || | ||| || | ||| | || || | Sbjct 4699 GCACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCG-ATTATTTGA 4641 Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 ||||| || ||| | |||||| | | |||| | ||| | || |||| | ||| Sbjct 4640 TTTTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTC 4581 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || |||||||| || |||| || || | | ||| ||||| || ||| | |||||| Sbjct 4580 ACAACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCG 4521 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 ||||||||||| || |||| |||||| || ||||| || || ||||| || || | || Sbjct 4520 AAAGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGC 4461 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 || || || | || |||||||| || || |||||| ||| ||||||||| ||| Sbjct 4460 AGAGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGA 4401 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696 | | || || || | ||||||||| || || | | || || | || || Sbjct 4400 TTTGTGGGT---ACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTT 4344 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || || || || || |||| |||| | || | || || || ||||| || ||||| ||| Sbjct 4343 CCCTCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCG 4284 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 || || || || || ||||| || | | |||| || | || || || Sbjct 4283 CCATAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAG 4224 Query 22817 GGCATAC-GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 || |||| |||| | | || || || || | || ||||| || || || || || || Sbjct 4223 GG-ATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACG 4165 Query 22876 GTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCT 22935 | | | | || || || |||||||||| ||| || |||| |||||| | | Sbjct 4164 ATGTCTTAAGTTGGATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTT 4105 Query 22936 GTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC 22995 |||||||||| |||| ||||| || || | |||||||||| || | Sbjct 4104 GTTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTA--CGTC 4047 Query 22996 CGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053 | || || ||| | |||| || ||||| || | |||||| || || | ||| Sbjct 4046 TTCTCCGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCA 3987 Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113 ||| | | ||||| |||||||| || || | || || || || || ||||||| | Sbjct 3986 TCTGGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACA 3927 Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173 || |||||||| || || || |||||||||||| ||||||||||||| ||||| ||| Sbjct 3926 TTTTGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTC 3867 Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTG---AACACG--TCGCA 23228 || || || ||||| ||||| || ||| | | ||||| | |||||| | || Sbjct 3866 TCCACTTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTGCT 3807 Query 23229 CGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288 || ||| |||||| |||| ||| || | | | ||||| | |||| || | Sbjct 3806 CGACCCT-CCTTCT----CGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACAT 3752 Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAA 23345 | || || || || | | ||| ||||| || ||| || ||||| ||| | Sbjct 3751 CAGCGAGTCCTGGACACTTGTGCGGGCACATCAGTGACCA-ATCC--TCATTGGCTTCCA 3695 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 |||| ||||||| | ||| |||||||| || || |||||||| || || || || | Sbjct 3694 CGCGCTTCATAAACAAATCTGGTATCCACAGGGCATAGAACAGATCCCGAGCACGATGTT 3635 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 |||||||||| |||||||| || | |||||| || || || || || | |||||| |||| Sbjct 3634 CCTCTTTGCCAGTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCT 3575 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 ||||||||| |||||| || || ||||| || ||| |||||||| || ||||| ||| Sbjct 3574 CGAGGTAAATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCA 3515 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA 23585 ||||| | ||||| ||||| || || | || ||||| | || | |||| Sbjct 3514 CATTGTTAAATACTCTCAGCATAGGAACCAAGCCATTGGATGTACC----ATTGGTGCCA 3459 Query 23586 C-ACTCGAA---CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 | | ||||| || || || |||| | || || | | ||| || || || | || Sbjct 3458 CTAATCGAAGTTCCCTTGGCCCGAATGCAATGCACATTCAGACCAATACCACCTGCTGAC 3399 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || |||||||| || || | || || | |||| |||||||| ||| | Sbjct 3398 TTTGAGATCATCGCACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACC 3339 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | | || | || || ||||||| || | | || || || | ||| ||||| Sbjct 3338 ATGGTGAGGAGAAAGCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTT 3279 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 || ||| || || ||| | | | ||| | | |||||| || || | |||| |||| Sbjct 3278 GGTGAGGCATGTGTGAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCA 3219 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 || || ||||| |||||||||||||| || ||||||| ||||| || || | || | Sbjct 3218 ATATCATCTCCATGTATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCA 3159 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 ||| || ||||| |||| ||| || || | || || || ||||||||||| | | Sbjct 3158 ACTTTGCCATTGATTTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTA 3099 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACG 23982 ||| ||| |||||||||| | ||||| || || ||||| Sbjct 3098 TAGCCAAAATCACGATCGTATATAATGGCAGAGTTTAAACG 3058 >seq19922 Length=1369 Score = 192 bits (212), Expect = 5e-44 Identities = 378/553 (68%), Gaps = 21/553 (4%) Strand=Plus/Plus Query 57586 AAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCG 57645 ||||||| ||||| || || |||||||| || ||||| || || || ||||| ||| || Sbjct 680 AAAAGGCCGAAGCTTCATTCTGGACCGTGGAGGAAGTGGATCTATCCAAGGACATGACCG 739 Query 57646 ATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCG 57705 | |||| | || | ||| |||| | | || ||| ||| || ||||| || || | Sbjct 740 ACTGGGCTCGACTAACAGACAATGAGCGTCACTTCATTTCACATGTTTTGGCTTTCTTTG 799 Query 57706 CCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAG 57765 |||| || || || |||||||| |||||| | ||||| | || || ||||||||| Sbjct 800 CCGCCTCTGACGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAAGTGCAAA 859 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | || ||||| | |||||||| || || || | ||||| || || || || || |||| Sbjct 860 TCACAGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAAA 919 Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGA----CAACGACGAGAAACGTAGACTG 57881 |||| | |||||||| || ||| | ||| || | || || || || Sbjct 920 TGTACAGCGTGCTCATCGACACTTACATTCGGGATCCGCATCAGCGCGAC---TAC-CTC 975 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAA 57938 ||||| || || ||||| |||||||| | ||| |||||||| ||| | | Sbjct 976 TTCAATGCCATTGAAACGATGCCCGCTGTG---AAGCGTAAGGCAGATTGGGCTCTGTCT 1032 Query 57939 TGGATAAAAAGCGCCA---CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 ||||| | | | |||| | || | |||| | | || || || || || ||| Sbjct 1033 TGGATCTC---CTCGAAGGCGGCAAACTTTGGCGAGCGCATCATTGCCTTTGCTGCTGTC 1089 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 ||||| || ||||| ||||| |||||| | || || ||| ||||||| || || || Sbjct 1090 GAAGGCATCTTCTTCAGCGGCAGTTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTT 1149 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGAT 58115 |||||||| || || || || ||| |||| || ||||||||||| || ||| ||| Sbjct 1150 ATGCCCGGTCTTACCTTCTCGAATGAGCTGATCTCCCGCGACGAGGGACTTCATTGCGAT 1209 Query 58116 TTTGC-GTGCCTA 58127 ||||| |||| || Sbjct 1210 TTTGCTGTGCTTA 1222 >seq2274 Length=37031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || ||||| |||||||| ||||| |||| ||||| || |||||| | || || || Sbjct 30153 TCCAAAATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAG 30212 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || || | | || | ||||| | || ||||||||| || | || || Sbjct 30213 CCATCTGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCA 30272 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || ||||||||||| || ||||||||||| ||| |||| || | ||| | || Sbjct 30273 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGAC 30332 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || || || || |||| || | ||| | || |||| Sbjct 30333 TACAACATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTA 30387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445498566830640