Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2144 444 7e-120 seq19922 197 2e-45 >seq2144 Length=13752 Score = 444 bits (492), Expect = 7e-120 Identities = 1231/1873 (66%), Gaps = 26/1873 (1%) Strand=Plus/Minus Query 62033 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62092 || ||| || | || || ||||| | | || ||| || || || || ||||| ||||| Sbjct 4935 ATTCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACAT 4876 Query 62093 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62152 ||| ||||| ||||| |||| | | ||||| || || || || |||| | Sbjct 4875 TCCTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATT 4816 Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212 || || |||| ||| ||||| | |||||||||||||| ||||| ||||| | ||||| Sbjct 4815 TGGTTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 62213 AGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA---CTCGCTT 62269 |||||||| || | | |||| | |||||||||| || ||||| | | ||| Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC-- 4698 Query 62270 AATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTACCATAATCCTATT 62326 | || || |||| |||| | || || ||||| |||| | | | || || ||| Sbjct 4697 -ACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATT 4639 Query 62327 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 || || ||||||| ||| || | ||||||| | | | | | ||| | || || Sbjct 4638 TTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCAC 4579 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 || || || |||||||||| |||| | ||||| || || || || ||||| | Sbjct 4578 AACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAA 4519 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| |||| || || || || ||||| || ||||| ||||| | | | Sbjct 4518 AGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAG 4459 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATC 62566 | ||| | | |||| | || || || || || || | |||| | ||| |||| Sbjct 4458 AGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATT 4399 Query 62567 CGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTA 62625 | ||||| | ||| || |||||||| || || | | || ||| Sbjct 4398 TGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGAC-TTCCCT 4340 Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| | || || |||||||| || | ||| || || || ||||| || | Sbjct 4339 CATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCAT 4280 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 | ||||||||||| || |||| | ||| ||| || | || ||| | |||| Sbjct 4279 AGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGAT 4220 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | ||| || || || || | ||||||||| ||||| || || || | ||||| Sbjct 4219 ACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGTC 4160 Query 62806 TCTTATTAGAGATTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | | | | | |||||| ||| || || | ||| || ||||| ||||| || || || || Sbjct 4159 T-TAAGTTG-GATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTT 4102 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC--AAATC-GCCC 62920 | ||| || || | ||| || || || || || | ||| || | || | | Sbjct 4101 CAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTC 4042 Query 62921 ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 | |||| ||||| || | || | ||||||| ||| || || || | ||||| | Sbjct 4041 CGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGG 3982 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | ||| | | || |||||||| | ||||| || || || || || | |||||| Sbjct 3981 TGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTG 3922 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||| || ||||| |||||||| |||||| | || ||| | || || ||||| || | Sbjct 3921 TTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCAC 3862 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCC 63159 || || || || || || ||| | | | ||||||| || | | |||||| || | Sbjct 3861 TTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTG-CTCGAC 3803 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || | |||||| ||||| | || |||| || |||||||||| | | || Sbjct 3802 CCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTC 3743 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||||| | | ||| ||||||| ||||| || | | | | ||| || ||||||| Sbjct 3742 CTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAA 3683 Query 63280 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 | | ||| || ||||| || || ||| || ||||| | | | ||||||||| || || Sbjct 3682 ACAAATCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCA 3624 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 || ||||| |||||||| | |||| | | | ||| |||||||| || || | ||| ||| Sbjct 3623 GTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATG 3564 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | ||||||| | |||| || |||||||| | || | || || ||| | Sbjct 3563 GCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAAT 3504 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 ||||||| ||| |||| | || || ||| |||||||||| || || | ||| Sbjct 3503 ACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCCC 3444 Query 63519 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||| ||||| | | | ||| ||||| || || ||||| || ||||| | | Sbjct 3443 TTGGCCCGAATGCAATGCACATT--CAGACCAATACCACCTGCTGACTTTGAGATCATCG 3386 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || | | | | | | |||| || || || ||| | |||| | || |||| Sbjct 3385 CACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAA 3326 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||||| || | || || ||| | || || | || || || || || | Sbjct 3325 AGCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGTG 3266 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || | ||| ||||| | |||||| ||||| | || || || ||||| | || Sbjct 3265 TGAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCAT 3206 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || || | || || ||||| | ||||||||| || | |||| ||| |||| || | Sbjct 3205 GTATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTGA 3146 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 |||| ||||| || ||| |||||||| || || |||||||| || || ||| || | Sbjct 3145 TTTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAATCAC 3086 Query 63877 GTTCGTAAATAAT 63889 | ||||| ||||| Sbjct 3085 GATCGTATATAAT 3073 >seq19922 Length=1369 Score = 197 bits (218), Expect = 2e-45 Identities = 366/535 (68%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || |||||||| || || |||||||| | || | || || || || || || ||| Sbjct 1214 GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCG 1155 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || |||||||| || ||||| || || || || || ||| |||||||| Sbjct 1154 GGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATG 1095 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA--TC 33761 ||||| || |||||||||||||| | | ||| ||| | || || || | | || Sbjct 1094 CCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGATC 1035 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || |||||||||| ||||| || ||| ||||||||||| |||||||| ||| Sbjct 1034 CAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAG 975 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || |||| | || ||| || ||||| ||||| | | || ||||||||| Sbjct 974 AGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCC 915 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || | || || ||||| ||||| || || || || || | ||||| || || ||| Sbjct 914 GAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGC 855 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 ||||| | || || || | | ||| ||||| || || || ||| ||| ||||| Sbjct 854 ACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAG 795 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || ||||| |||||| || || | || | ||||||| | ||| || | Sbjct 794 AAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTC 735 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 || || || |||| ||||||||| ||||| ||||| ||||| || || ||||||| Sbjct 734 ATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629439181967760