Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2144 228 8e-55
>seq2144
Length=13752
Score = 228 bits (252), Expect = 8e-55
Identities = 1176/1856 (63%), Gaps = 46/1856 (2%)
Strand=Plus/Minus
Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864
|||| ||| | ||||| || || | | |||||||||||| ||||| || ||| | ||
Sbjct 4913 ATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCTGTTTTAAGACCCGCTTTC 4854
Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924
|| | | ||||| || ||||| || | || | || | | ||| || || |
Sbjct 4853 CAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATTTGGTTCAGCTACATGAATATTA 4794
Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984
| |||||||||||||| || || || || | || |||||||||| | | | |||
Sbjct 4793 AAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGCCATTTTGATTGTGGACTTT 4734
Query 36985 TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA-ATG 37043
||||| |||||||| || ||||||| || | ||| | || | | | |||
Sbjct 4733 ACGGATATTTCCCAAACGGTCTTATATAGTTCACGCACATTTTGAGGAATGTTTTCGATG 4674
Query 37044 TT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTT 37101
|| | || || ||| | | | ||| ||| || || |||| || ||||| |
Sbjct 4673 TTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTTCATATCATCATCCCACAAGT-- 4616
Query 37102 CTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATA 37159
| | || |||| || | ||| | || |||| ||||||||||| |||||||| | |
Sbjct 4615 CCAGTTCGGTTAGATCACGCAACAAATGATGATTCACAACCTGAAACTCTCCAGACAGCA 4556
Query 37160 CTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTT 37219
||| |||||| || || || ||| || ||||| | || |||||||||| | ||| |
Sbjct 4555 CTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAAAGATTCATTATTACCCATTATCT 4496
Query 37220 GAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTAT 37279
| | ||| ||||| || ||||||||||| || || || ||| | || ||| || |
Sbjct 4495 GGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGAGAATTACGCACTCCGTGCTTGC 4436
Query 37280 TAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA-CCACATA 37338
| || ||| || |||| ||| ||||| | || ||| |||| | ||| |||||||
Sbjct 4435 TTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATTTGT-GGGTACCTTATTCCACATA 4377
Query 37339 TCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAA 37398
||||| || |||||||| || || ||||| | | ||| |||||||| | || |
Sbjct 4376 TCATACTGGAGAATACCCTTGCTAACTGGACTTCCCTCATAGGTCTCATACGTGCCATCT 4317
Query 37399 ATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGT 37458
| | ||| || || || || | ||| | |||| |||| || || |||||||| || |||
Sbjct 4316 TTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCATAGTAAATGGTTTCGAATATCTGT 4257
Query 37459 ATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCA 37518
||| | | || | || || || | | ||| | || ||| || || ||||
Sbjct 4256 TGATTCAGAAGACACGCCTTATCACTCTCATAGGGATACCGCATTAAAATCAAAGCATCT 4197
Query 37519 GCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA--TTAGATCTAGACGATT 37576
|| | || ||||| || || || || || | ||| ||||| || ||| | | |
Sbjct 4196 GCAAGTCCTTGAACTCCAATTCCAATTGGACGATG--TCTTAAGTTGGATTTCTTAGCCT 4139
Query 37577 CTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCG 37636
| || || || ||||||||||| || || || || | ||||| | || || |
Sbjct 4138 CGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTCAAGTTTTTGGTAACAATCTTGG 4079
Query 37637 TAATTATTCTCAACTT------GTCGAACAT-AAATACGTTATTATTAACAAATTTACTC 37689
| | | | | ||| |||| || | | || | ||| |||| || |
Sbjct 4078 TGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTCCGGTGTTACGAACA----TATTG 4023
Query 37690 AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT--TGTATAA 37747
| | || ||| | | ||| || ||||||| |||||| | | | ||| | | ||
Sbjct 4022 AGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCT--GGTGCAGAATACTCAACAA 3965
Query 37748 TCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTAT 37807
| || || || | ||||| || ||||||| |||| ||| ||| ||| || |
Sbjct 3964 TTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGCGGT 3905
Query 37808 TACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAG 37867
|||| ||||| || | || || ||||| || || || | ||| | ||| || || |
Sbjct 3904 TACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGTGACTCAATGATGG 3845
Query 37868 ATTTCCATA--AACT---TCTTGCTTTAACGA-TCGCTTTAAtttttttCTTTGTTTCGT 37921
||| | | | |||| | |||| | ||| | | ||| ||||
Sbjct 3844 CAAACCAAAGGGATTGAGCCTTGATAACACGATTTGCTCGACCCTCCTTC------TCGT 3791
Query 37922 ATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGC 37981
||| | |||| | | | ||| | || ||||| ||||| | ||||||||| | |
Sbjct 3790 ATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGT 3731
Query 37982 ATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTA 38041
|| ||||| || ||||| || |||| ||| ||||| | |||||| ||||| ||||
Sbjct 3730 GCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTA 3671
Query 38042 CCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTA 38101
||| | ||| || | ||| | | || ||| || || || ||| ||||||
Sbjct 3670 TCCACAGGGCATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAGTGTTC-TTCTTA 3612
Query 38102 AGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCT 38160
|| | | || || || | ||| | ||||| || || | ||||| | | |||||
Sbjct 3611 AGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCA 3552
Query 38161 GGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATA 38220
|||||||| | || ||||||| | ||| | | || ||| ||| ||| | ||||
Sbjct 3551 GGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATA 3492
Query 38221 GGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT- 38279
|| || | ||||| ||| | || || | || || |||| ||||| || || ||
Sbjct 3491 GGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCCCTTGGCCCGAATG 3432
Query 38280 -ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTA 38338
| | | || || || || |||||||| ||||| || | || || || | |
Sbjct 3431 CAATGCACAT--TCAGACCAATACCACCTGCTGACTTTGAGATCATCGCACACTGCTCCA 3374
Query 38339 ACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACA 38398
| | ||| || || || || |||| || | || | ||| || |||||
Sbjct 3373 CAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAAAGCATGAAGACA 3314
Query 38399 TTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTT 38458
||||| || ||| | || || | ||| || || |||||| |||| | ||
Sbjct 3313 GCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGTGTGAAGAAGCGTT 3254
Query 38459 CCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAG 38518
|||| | |||| || || || | | | ||| |||||| | || || ||||| | |
Sbjct 3253 CCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCATGTATACCGATGG 3194
Query 38519 ATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGAT 38578
|| | ||| ||||| || ||||| | ||| | ||| ||| ||| | | ||
Sbjct 3193 CAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTGATTTTTAACAAAT 3134
Query 38579 ACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634
||||| || || || || | |||||||||| |||| | |||| | |||||||
Sbjct 3133 ACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAATCACGATCGTAT 3078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468243292730480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |