Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2144 132 5e-26 seq7704 102 8e-17 seq2274 89.7 5e-13 >seq2144 Length=13752 Score = 132 bits (146), Expect = 5e-26 Identities = 679/1072 (63%), Gaps = 38/1072 (4%) Strand=Plus/Minus Query 152738 ATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCC 152797 |||||| ||||| || |||| ||| ||||| || || || || || || |||| Sbjct 4908 ATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCTGTTTTAAGACCCGCTTTCCAGGA 4849 Query 152798 GTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGC--CATGTACACGTTAAAC 152855 | | | || | || | || |||| | || | || || || |||| | | ||||| Sbjct 4848 GAAGAAATGAATGGATGTCAGCTTACCATAATTTGGTTCAGCTACATGAATA--TTAAAG 4791 Query 152856 GATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCG 152915 ||||||||||||||||| || || || | |||||||||||| | ||| || | ||| || Sbjct 4790 GATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGCCATTTTGATTGTGGACTTTACG 4731 Query 152916 TTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAATGTTGTCGGGAATTTCA 152975 | | | |||||| | ||| | || || | | || | ||||| | Sbjct 4730 --GATAT-------TTCCCAAACGGTCTTATATAGTTCACGCACATTTTGAGGAATGTTT 4680 Query 152976 TCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCCGCATACTACTTGTGTAC 153035 || ||| ||| || || || |||| || || || |||| | || Sbjct 4679 TCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTTCATATCATCATCCCAC 4620 Query 153036 AGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGAC 153095 | | || | || |||||||| | ||| | | || ||||| ||||| || || ||| Sbjct 4619 AAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCACAACCTGAAACTCTCCAGAC 4560 Query 153096 AATACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTCAAACGACTCGTTGTTATTG 153152 | || ||||| | | || | ||| | ||||| || || || || ||| Sbjct 4559 AGCACTCGTCTTGTGTAGATGTTTGAAGTGT---AGGGTTCGAAAGATTCATTATTACCC 4503 Query 153153 AGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCG 153212 | ||| || || |||| ||||| ||||| || | ||||| |||||||| | |||| Sbjct 4502 ATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGAGAATTACGCACTCCG 4443 Query 153213 TGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTC 153272 || || ||| ||| ||| | || | ||||||||| | || |||| | |||| Sbjct 4442 TGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATTTGTGGGTACCTTATTC 4383 Query 153273 CACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGC 153332 |||| ||| || || | || || | |||| || || || || | || ||||| Sbjct 4382 CACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCCTCATAGGTCTCATACGTG 4323 Query 153333 TCA-CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGA 153391 || || || | ||||| | | ||||| || | ||| ||| || | |||||| | Sbjct 4322 CCATCTTTCTCA-GCCAGCTCACAGCTGGCTTCCAATGCGCCATAGTAAATGGTTTCGAA 4264 Query 153392 AATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAA 153451 ||||||| ||||| | | || ||| ||| | || || |||| | | || Sbjct 4263 TATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGATACCGCATTAAAATCAA 4204 Query 153452 TGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttt 153511 ||||| || | ||||||| ||||| || || |||||||| | | || ||||| || Sbjct 4203 AGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGTCTTAAGTTGGATTTCTT 4144 Query 153512 tGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACA-T 153570 || | | ||| ||| ||||| ||||| || || || || | | ||| | Sbjct 4143 AGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTCAAGTTTTTGGTAACAAT 4084 Query 153571 GTT--TCACCACAGAATGCAACAGTTGAAAATCAAACGT----TCCA---TTAATGATAT 153621 || | ||| | || || ||| || |||| ||| ||| | || Sbjct 4083 CTTGGTGACCTCTTTGAGCTTCAC---AAAGTCGTACGTCTTCTCCGGTGTTACGAACAT 4027 Query 153622 ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATT 153681 ||| || || ||||| ||||| |||||||| ||| | || || || || |||| | Sbjct 4026 ATT----GAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGTGCAGAATACT 3971 Query 153682 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTT 153741 || ||||| | ||||| || |||||||| || ||| ||| ||| ||||| | Sbjct 3970 CAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCT 3911 Query 153742 TGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 |||||||||| | |||||| | |||||||| |||||||| || || |||| Sbjct 3910 TGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTG 3859 >seq7704 Length=29863 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || |||||||| |||||||| |||||| | |||| ||||| Sbjct 18558 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCC 18499 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || |||||| |||||| ||| |||||||| ||||| || ||||||||||| || Sbjct 18498 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 18440 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 18439 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 18380 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 18379 ACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq2274 Length=37031 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | || || | ||||||||| Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495765946146400