Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2144 132 5e-26
seq7704 102 8e-17
seq2274 89.7 5e-13
>seq2144
Length=13752
Score = 132 bits (146), Expect = 5e-26
Identities = 679/1072 (63%), Gaps = 38/1072 (4%)
Strand=Plus/Minus
Query 152738 ATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCC 152797
|||||| ||||| || |||| ||| ||||| || || || || || || ||||
Sbjct 4908 ATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCTGTTTTAAGACCCGCTTTCCAGGA 4849
Query 152798 GTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGC--CATGTACACGTTAAAC 152855
| | | || | || | || |||| | || | || || || |||| | | |||||
Sbjct 4848 GAAGAAATGAATGGATGTCAGCTTACCATAATTTGGTTCAGCTACATGAATA--TTAAAG 4791
Query 152856 GATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCG 152915
||||||||||||||||| || || || | |||||||||||| | ||| || | ||| ||
Sbjct 4790 GATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGCCATTTTGATTGTGGACTTTACG 4731
Query 152916 TTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAATGTTGTCGGGAATTTCA 152975
| | | |||||| | ||| | || || | | || | ||||| |
Sbjct 4730 --GATAT-------TTCCCAAACGGTCTTATATAGTTCACGCACATTTTGAGGAATGTTT 4680
Query 152976 TCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCCGCATACTACTTGTGTAC 153035
|| ||| ||| || || || |||| || || || |||| | ||
Sbjct 4679 TCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTTCATATCATCATCCCAC 4620
Query 153036 AGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGAC 153095
| | || | || |||||||| | ||| | | || ||||| ||||| || || |||
Sbjct 4619 AAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCACAACCTGAAACTCTCCAGAC 4560
Query 153096 AATACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTCAAACGACTCGTTGTTATTG 153152
| || ||||| | | || | ||| | ||||| || || || || |||
Sbjct 4559 AGCACTCGTCTTGTGTAGATGTTTGAAGTGT---AGGGTTCGAAAGATTCATTATTACCC 4503
Query 153153 AGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCG 153212
| ||| || || |||| ||||| ||||| || | ||||| |||||||| | ||||
Sbjct 4502 ATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGAGAATTACGCACTCCG 4443
Query 153213 TGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTC 153272
|| || ||| ||| ||| | || | ||||||||| | || |||| | ||||
Sbjct 4442 TGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCCCAGAGATTTGTGGGTACCTTATTC 4383
Query 153273 CACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGC 153332
|||| ||| || || | || || | |||| || || || || | || |||||
Sbjct 4382 CACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCCTCATAGGTCTCATACGTG 4323
Query 153333 TCA-CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGA 153391
|| || || | ||||| | | ||||| || | ||| ||| || | |||||| |
Sbjct 4322 CCATCTTTCTCA-GCCAGCTCACAGCTGGCTTCCAATGCGCCATAGTAAATGGTTTCGAA 4264
Query 153392 AATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAA 153451
||||||| ||||| | | || ||| ||| | || || |||| | | ||
Sbjct 4263 TATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGATACCGCATTAAAATCAA 4204
Query 153452 TGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttt 153511
||||| || | ||||||| ||||| || || |||||||| | | || ||||| ||
Sbjct 4203 AGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGTCTTAAGTTGGATTTCTT 4144
Query 153512 tGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACA-T 153570
|| | | ||| ||| ||||| ||||| || || || || | | ||| |
Sbjct 4143 AGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTCAAGTTTTTGGTAACAAT 4084
Query 153571 GTT--TCACCACAGAATGCAACAGTTGAAAATCAAACGT----TCCA---TTAATGATAT 153621
|| | ||| | || || ||| || |||| ||| ||| | ||
Sbjct 4083 CTTGGTGACCTCTTTGAGCTTCAC---AAAGTCGTACGTCTTCTCCGGTGTTACGAACAT 4027
Query 153622 ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATT 153681
||| || || ||||| ||||| |||||||| ||| | || || || || |||| |
Sbjct 4026 ATT----GAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGTGCAGAATACT 3971
Query 153682 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTT 153741
|| ||||| | ||||| || |||||||| || ||| ||| ||| ||||| |
Sbjct 3970 CAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCT 3911
Query 153742 TGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793
|||||||||| | |||||| | |||||||| |||||||| || || ||||
Sbjct 3910 TGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTG 3859
>seq7704
Length=29863
Score = 102 bits (112), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || |||||||| |||||||| |||||| | |||| |||||
Sbjct 18558 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCC 18499
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
| || || |||||| |||||| ||| |||||||| ||||| || ||||||||||| ||
Sbjct 18498 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 18440
Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | || | ||| | | ||| | || || | || || ||||||| || | |||||
Sbjct 18439 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 18380
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | ||||| ||||| || |||||
Sbjct 18379 ACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350
>seq2274
Length=37031
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || ||||| || ||
Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| || ||||| |||||||||| |||||||| |||||
Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | || || | |||||||||
Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495765946146400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |