Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2144 522 4e-143 seq19922 217 2e-51 >seq2144 Length=13752 Score = 522 bits (578), Expect = 4e-143 Identities = 1254/1883 (67%), Gaps = 28/1883 (1%) Strand=Plus/Minus Query 78705 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 78764 || ||| || | || || ||||| | | || ||| || || || || ||||| ||||| Sbjct 4935 ATTCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACAT 4876 Query 78765 TCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACT 78824 ||| ||||| ||||| |||| | ||||||| || || || || |||| | Sbjct 4875 TCCTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATT 4816 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || || |||| ||| ||||| | |||||||||||||| ||||| ||||| | ||||| Sbjct 4815 TGGTTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT---CGCTT 78941 |||||||| || | | |||| | |||||||||| || ||||| | | ||| Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC-- 4698 Query 78942 AATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATT 78998 | || || |||| |||| | || || ||||| |||| | ||| || || ||| Sbjct 4697 -ACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATT 4639 Query 78999 CTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 79058 || || || |||| ||| || | ||||||| | | | | | ||| |||| || Sbjct 4638 TTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCAC 4579 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 || ||||| |||||||||| |||| | ||||| || || || || ||||| | Sbjct 4578 AACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAA 4519 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| |||| || || || || |||||||||||||| ||||| | | | Sbjct 4518 AGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAG 4459 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC--CCAATCCCAAAGA 79236 | ||| | | |||| || || || || || ||| ||| ||| ||||| ||| Sbjct 4458 AGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTT--GAGTTTCGCCCAGTCCCAGAGA 4401 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCT 79296 | | || || |||||| | |||||| || |||||||| || ||| | ||| Sbjct 4400 TTTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCC 4341 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 || || ||||| | || || || || || | ||||| || || || ||||| || Sbjct 4340 TCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCA 4281 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 || |||||||||||||| |||| | ||| ||| || | || ||| | ||| Sbjct 4280 TAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGA 4221 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 || | | ||| || || ||||| | ||||||||| ||||| || || || | |||| Sbjct 4220 TACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGT 4161 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 || || || | | ||| || || | ||| || ||||| ||||| || || || || Sbjct 4160 CTTAAGTTGGATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTC 4101 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CA 79593 | || || | | ||| || || || || || | ||| || | || || | Sbjct 4100 AAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTCC 4041 Query 79594 TCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 | |||| ||||| || | || | ||||||| ||| ||||| || | ||||| | Sbjct 4040 GGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGT 3981 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 | | ||| | | ||||||||||| | |||||| || ||||| || || | ||||||| Sbjct 3980 GCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGT 3921 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 || || ||||| |||||||| |||||| | || ||| |||| || ||||| || | Sbjct 3920 TGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACT 3861 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GACTTGTATCTCTT 79832 || || || || || || ||| | | | ||||||| || | | || ||| ||| Sbjct 3860 TGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTG---CTCGA 3804 Query 79833 TTCTCTTTC--GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 ||| ||| ||||| |||||| | || |||| || ||||||||||| | | | Sbjct 3803 CCCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGT 3744 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || ||||| | || || ||||||| ||||| || ||| | | || || |||||| Sbjct 3743 CCTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATA 3684 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || | ||| || ||||| || || ||| || ||||| | | | ||| ||||| || || Sbjct 3683 AACAAATCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCC 3625 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 || ||||| |||||||| | |||| | | | ||| |||||||| || || | ||| || Sbjct 3624 AGTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAAT 3565 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | |||| |||| |||| || |||||||| | || | || || ||| | Sbjct 3564 GGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAA 3505 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 ||||||| ||| |||| | |||||||||||||||||||| || || | |||| Sbjct 3504 TACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCC 3445 Query 80190 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 |||| ||||| | | | ||| ||||| || || ||||| || ||||| | Sbjct 3444 CTTGGCCCGAATGCAATGCACATT--CAGACCAATACCACCTGCTGACTTTGAGATCATC 3387 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 || || | | | | | | |||| ||||| || ||| | |||| | || ||| Sbjct 3386 GCACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGA 3327 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 || || ||||| || | || | ||| | || || | || || || || || Sbjct 3326 AAGCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGT 3267 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || | ||| || || | |||||| ||||| | || || || ||||| | | Sbjct 3266 GTGAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCA 3207 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || || || | || || ||||| | ||||||||| || | |||| | | ||| ||| Sbjct 3206 TGTATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTG 3147 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 ||||| ||||| || ||| |||||||| || || |||||||| || || ||| || Sbjct 3146 ATTTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAATCA 3087 Query 80548 CGTTCGTAAATAATAACCGAGTT 80570 || ||||| ||||| | ||||| Sbjct 3086 CGATCGTATATAATGGCAGAGTT 3064 >seq19922 Length=1369 Score = 217 bits (240), Expect = 2e-51 Identities = 373/537 (69%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || |||||||| || || |||||||| | || || || || || || || || ||| Sbjct 1214 GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCG 1155 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGA 50080 ||||| || |||||||| || ||||| || || |||||||| || | | ||| ||||| Sbjct 1154 GGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAA--GAAGA 1097 Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGTA-- 50137 | ||||| || || |||||||||| | | ||| ||| | | || || || | | Sbjct 1096 TGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGA 1037 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| |||||||||| ||||| || ||| ||||||||||| |||||||| | Sbjct 1036 TCCAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGA 977 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 |||| |||| | || ||| || ||||| ||||| | | || ||||||| Sbjct 976 AGAGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTT 917 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 |||| || | || || ||||| ||||| || || || || || | ||||| || || | Sbjct 916 CCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTT 857 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 ||||||| | || || || | | ||| ||||| || || |||||| ||| |||| Sbjct 856 GCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAA 797 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || ||||| |||||| || || || || ||| ||||||| | ||| || Sbjct 796 AGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGG 737 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | || || || |||| ||| ||||| ||||| ||||| ||||| || || ||||||| Sbjct 736 TCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717837237169880