Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq19922 87.8 2e-12 >seq19922 Length=1369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 340/528 (64%), Gaps = 5/528 (1%) Strand=Plus/Minus Query 13656 TAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 ||| ||| |||||||| |||||||| ||||| || | || || || || || || | Sbjct 1222 TAAGCACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGG 1163 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 | | || ||||| | || || || || | ||| || || | || || ||| | Sbjct 1162 TAAGACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGA 1103 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 |||| || || || || |||||||| || || | || || ||||| ||| || Sbjct 1102 AGAAGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCG 1043 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || ||||| |||||| || | || || | | ||| ||||| || | Sbjct 1042 AGGAGATCCAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGG 983 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 ||||||| | | || || | | | |||||| || || || || | ||| | Sbjct 982 CATTGAAGAGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGT 923 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||| ||||| | || || || || ||||| || |||||||| || | || |||| Sbjct 922 ACATTTCCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTG 863 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACAATACCATCACTA 14073 ||| || ||| | || | || | |||| || ||||||||||| || ||| Sbjct 862 TGATTTGCACTTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCGTCAGAG 804 Query 14074 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTT 14132 || ||||| || ||||| | | | ||| |||| |||| || |||| ||| Sbjct 803 GCGGCAAAGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTT-AGTCGAGC 745 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||| |||| | ||||| || ||||| ||||| || || ||||| || Sbjct 744 CCAGTCGGTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAA 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478301245901880