Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2144 428 6e-115 seq19922 161 1e-34 >seq2144 Length=13752 Score = 428 bits (474), Expect = 6e-115 Identities = 1211/1858 (65%), Gaps = 22/1858 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||||||||| | | || ||| | || || || ||||| ||||| |||||||| ||| Sbjct 4922 GTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCTGTTTTAAGA 4863 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || |||| | | ||||| || || || || ||| | || || |||| Sbjct 4862 CCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATTTGGTTCAGCTACA 4803 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 |||||||| | || ||||||||||| ||||| ||||| | ||||| |||||||| || Sbjct 4802 TGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGCCATTTTGATT 4743 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT---CGCTTAATATCTTCTGGA 71037 | | |||| | |||||||||| || ||||| | | ||| | || || ||| Sbjct 4742 GTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC---ACATTTTGAGGA 4686 Query 71038 AGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCA 71094 | |||| | || || ||||| |||| | ||| || || |||||| || || ||| Sbjct 4685 ATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTTCATATCATCA 4626 Query 71095 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCT 71154 | ||| || | ||||||| | | | | | |||| |||| || || ||||| ||| Sbjct 4625 TCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCACAACCTGAAACTCT 4566 Query 71155 CCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT 71214 ||||||| |||| | ||||| || || || || ||||| | || |||||||| Sbjct 4565 CCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAAAGATTCATTATTA 4506 Query 71215 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGA 71274 |||| || || || || ||||| || ||||| ||||| | | ||| ||| | | Sbjct 4505 CCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGAGAATTACGCACT 4446 Query 71275 CCATGTGATCGGATTTTATCTTTTAGAGATTC--CCAATTCCAAAGATCCGATGGTACAA 71332 || || | || || || || ||| ||| ||| | ||| |||| | ||||| Sbjct 4445 CCGTGCTTGCTTATCTTCTCCTT--GAGTTTCGCCCAGTCCCAGAGATTTGTGGGTACCT 4388 Query 71333 CNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGT 71392 || || || ||| | ||| |||| || || | Sbjct 4387 TATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCCTCATAGGTCTCAT 4328 Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTT 71452 | | || ||||| || || || ||||| || || || ||||| ||||| |||||||||| Sbjct 4327 ACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCATAGTAAATGGTTT 4268 Query 71453 CGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512 |||| |||| | ||| ||| || | || ||| | ||||| | | || Sbjct 4267 CGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGGATACCGCATTAAAA 4208 Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572 | || || ||||| | ||||||||| ||||| || || || | ||||| || || Sbjct 4207 TCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATGTCTTAAGTTGGATT 4148 Query 71573 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTA 71632 | | ||| || || | ||| || ||||| ||||| || || || || | ||| || | Sbjct 4147 TCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTTCAAGTTTTTGGTAA 4088 Query 71633 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC---TATTACAAACA 71689 | ||| || || || || || | ||| || | || || | |||| |||| Sbjct 4087 CAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTCCGGTGTTACGAACA 4028 Query 71690 CGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTA 71749 || | || | ||||||| ||| ||||| || | ||||| | | | ||| | | Sbjct 4027 TATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGTGCAGAATACTCAA 3968 Query 71750 TAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 71809 |||||||||||| | ||||| || || || || || | ||||||||| || ||||| Sbjct 3967 CAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGC 3908 Query 71810 TGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 71869 |||||||| |||||| | || || |||| || ||||| || | || || || || | Sbjct 3907 GGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGTGACTCAATGA 3848 Query 71870 TCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT 71929 | || ||| | | | ||||||| || | | || || || | ||||||| Sbjct 3847 TGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTGCTCGACCCTCCTTCTCGTATT 3788 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 |||||| | || |||| || |||||| ||| | | ||| ||||| | | || Sbjct 3787 TTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCG 3728 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 | ||||||| |||||| || ||| | | || || |||||||| | ||| || |||| Sbjct 3727 GGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCC 3668 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 | || || ||| || ||||| | | | ||| ||||| || || || ||||| |||||| Sbjct 3667 ACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAGTGTTCTTCTTAAGA 3609 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || | |||| | | | ||| |||||||| || || | ||| ||||| | | |||| || Sbjct 3608 TCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGT 3549 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 | |||| || |||||||| | || | || || ||| | ||||||| ||| ||| Sbjct 3548 CTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGGA 3489 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 72286 | | |||||||||| ||||||||| || || | |||| |||| ||||| | Sbjct 3488 ACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCCCTTGGCCCGAATGCAA 3429 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 ||| ||| ||||| || || ||||| || ||||| | || || | | | | Sbjct 3428 TGCACATT--CAGACCAATACCACCTGCTGACTTTGAGATCATCGCACACTGCTCCACAG 3371 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 | | |||| ||||| || ||| | |||| | || ||||| || ||||| | Sbjct 3370 ATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAAAGCATGAAGACAGCT 3311 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | || | ||| | || || | || || || || || || || | ||| | Sbjct 3310 GAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGTGTGAAGAAGCGTTCCG 3251 Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGA 72526 | || | |||||| ||||| | || || || ||||| | |||||| || | || | Sbjct 3250 AAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCATGTATACCGATGGCAA 3191 Query 72527 CACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGG 72586 | ||||| | ||| ||||| || | |||| | | ||| ||| ||||| ||||| || | Sbjct 3190 CTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTGATTTTTAACAAATACG 3131 Query 72587 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||| || || |||||||| || || ||| || || ||||| ||||| Sbjct 3130 ATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAATCACGATCGTATATAAT 3073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 ||| | ||| |||||||||||||| ||||| || || || |||| |||||| || || Sbjct 2872 AAACACTTTCTTTGTTTCCTTGTGCAGATTGGAAACTGCAATTCGGGCGGCCAGTTGTGC 2813 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 |||||| | ||| || || || || | || || || ||||| |||| | ||||||| || Sbjct 2812 ATAATCCGCATGATGAGTTGTTAAACTTGCCGCAATCTCTGCAGCCAAATTGTCCAACTC 2753 Query 72885 T 72885 | Sbjct 2752 T 2752 >seq19922 Length=1369 Score = 161 bits (178), Expect = 1e-34 Identities = 358/535 (67%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || |||||||| || || ||||| || | || | || || || || || || ||| Sbjct 1214 GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCG 1155 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || ||||| || || |||||||| || |||||||| Sbjct 1154 GGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATG 1095 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATGT-ATC 42244 ||||| || || ||||||||||| | | ||| ||| | || || | | ||| Sbjct 1094 CCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGATC 1035 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || |||||||||| ||||| || ||| ||||||||||| |||||||| ||| Sbjct 1034 CAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAG 975 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 || |||| | || ||| || || || ||||| | | || |||||||| Sbjct 974 AGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCC 915 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || | || || ||||| ||||| || || || || || | ||||| || | || Sbjct 914 GAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGC 855 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 ||||| | || || || | | ||| || || || || |||||| ||| ||||| Sbjct 854 ACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAG 795 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544 || ||||| |||||| || || | || | ||||| | | ||| || | Sbjct 794 AAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTC 735 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 || || || |||| ||| ||||| || || ||||| ||||| ||||| ||||||| Sbjct 734 ATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670735954400920