Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7704 111 2e-19 seq2144 86.0 6e-12 >seq7704 Length=29863 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || || | ||| || ||||| || |||||||||||| | |||| ||||| Sbjct 18558 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCC 18499 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || |||||| |||||| ||| |||||||| ||||| || ||||||||||| | Sbjct 18498 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 18439 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | ||||| Sbjct 18438 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 18379 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| ||||| || ||||| Sbjct 18378 CCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq2144 Length=13752 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 157106 |||||| || ||||| || | ||| || || ||| | || || || || |||| | | Sbjct 4027 TATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGGTGCAGAATACTCAA 3968 Query 157107 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 157166 | ||||| | ||||| || |||||||| || || ||| ||| ||||| |||| Sbjct 3967 CAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGC 3908 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGA 157226 |||| || | |||||| | | ||||||||||||||| || || |||| || |||| Sbjct 3907 GGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGTGACTCAATGA 3848 Query 157227 TG 157228 || Sbjct 3847 TG 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506709766735440