Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq31562 194 2e-44 seq19922 158 2e-33 seq6480 152 8e-32 >seq31562 Length=3678 Score = 194 bits (214), Expect = 2e-44 Identities = 384/569 (67%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | || ||||| ||||| || ||||| | | ||||||||||| || || || Sbjct 2593 TTGCGGAAGAAAATGACACCGGCACGTGGACCACGCAATGTCTTGTGCGTGGTGGTTGTG 2652 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 ||||| ||| || | || || || || | | | | |||| | ||| || | Sbjct 2653 ACAATATCAGCGTATTGGAACGGTGAGGGTATCTCCTCGGCGGCAACAATGCCGGCCACA 2712 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || |||||||||||||| ||| || | ||||| |||| ||||| ||| | Sbjct 2713 TGAGCCATATCGGCCATCAGGTAGGCACCAACATCATCGCAGATCTGACGGAAACGTGCA 2772 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | | || | ||||| | ||||||| ||||||| | || ||| Sbjct 2773 TAGTCCAGGAGGCGGGAGTAGCACGAGATGCCGGCAATGATTATCTGCGGACGGAAAGCC 2832 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || | || | ||||| | ||| || ||||| |||||| ||||| Sbjct 2833 TTGGCCGCCTCAGCCAACTTATCGTAGTCAATGAGACCCGTCTGCGGATCCGTTTTGTAT 2892 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| || || || | ||||| || || | || ||| ||| ||| Sbjct 2893 GGCATGCTCTCAAAGAATATCGATGTGGCTGAGATTTTCTTCGTGGGCGTGAAGAAGCCG 2952 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| |||||| || ||||||||||| | ||||| || | | |||| || | | Sbjct 2953 TGCGTCAAGTGGCCACCATCGGGCAGATCCAAGCCCATAATACGATCGTGAGGACGCAAG 3012 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | ||| || ||| |||| | ||||| ||||||||||||||||| ||| || ||| Sbjct 3013 ACTCCCGTATACGCGGCCAGATTGGCTGGAGAGCCCGAGTACGGTTGCACATTGACGCCC 3072 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATG 127629 ||||||| || || | |||||| | | || | || ||| || | | ||||| Sbjct 3073 CATTCGGTATCCTTGAGGTTGAACAGTTTCAGGCCACGAGACTGCGCCAATAACTCGATT 3132 Query 127630 CGATCGATAAACTCGTTACCACCATAGTA 127658 | || ||| ||| ||| ||||||||||| Sbjct 3133 TGGTCAATATACTGGTTGCCACCATAGTA 3161 >seq19922 Length=1369 Score = 158 bits (174), Expect = 2e-33 Identities = 367/547 (67%), Gaps = 21/547 (4%) Strand=Plus/Plus Query 125035 AAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG 125094 ||||||| | || || || ||||| || || || || ||||| ||||||||| || || Sbjct 680 AAAAGGCCGAAGCTTCATTCTGGACCGTGGAGGAAGTGGATCTATCCAAGGACATGACCG 739 Query 125095 ATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCT 125154 | |||| |||| | || || | |||||| | || || || || ||||||| |||| Sbjct 740 ACTGGG---CTCGACTAACAGACAATGAGCGTCACTTCATTTCACATGTTTTGGCTTTCT 796 Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTG 125213 |||||| ||| || || || || || || ||||| || || || ||| || || || Sbjct 797 TTGCCGCCTCTGACGGCATTGTTAATGAGAATCTTGTCGAG-CGCTTCAGCCAGGAAGTG 855 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 || |||||| |||||||| || ||||| || || ||||| || |||||| Sbjct 856 CAAATCACAGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 915 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTC 125333 ||||||||| || || |||| |||||||| |||||||| | || ||| Sbjct 916 GAAATGTACAGCGTGCTCATCGACACTTACATTCGGGATCCGCATCAGCGCGACTACCTC 975 Query 125334 TTTAACGCAATCGACACGGTGCCGTCT---ATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || || || || ||| |||| || | ||| ||||| | |||| | Sbjct 976 TTCAATGCCATTGAAACGATGCCCGCTGTGAAGCGT---AAGGCAGATTGGGCTCTGTCT 1032 Query 125391 TGGA-----TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCG 125445 |||| |||| | || ||| ||| | ||| | | | || || || || | Sbjct 1033 TGGATCTCCTCGAAGGCGGCAA-ACTT----TGGCGAGCGCATCATTGCCTTTGCTGCTG 1087 Query 125446 TAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 | || ||||||||||| || ||||||||| | ||||| ||||| |||||||| || | Sbjct 1088 TCGAAGGCATCTTCTTCAGCGGCAGTTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGTC 1147 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTG 125565 | |||||||| || || | || ||| | || || || |||||||| || || || | Sbjct 1148 TTATGCCCGGTCTTACCTTCTCGAATGAGCTGATCTCCCGCGACGAGGGACTTCATTGCG 1207 Query 125566 ACTTTGC 125572 | ||||| Sbjct 1208 ATTTTGC 1214 >seq6480 Length=6706 Score = 152 bits (168), Expect = 8e-32 Identities = 266/383 (69%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 70149 AGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGACCAATCCAACAGATAGG 70207 |||| |||||||| |||| ||| | || ||||| | | |||||| | ||| | Sbjct 457 AGGGCATTGATCAACTGCA-ACAGGTTATCGACACCATACGCAACAATCCCTCTGATCGA 515 Query 70208 AGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGT 70267 | ||| ||||| | |||||||||| | ||| | | | | ||||| || || ||||| Sbjct 516 CGCATCATAATGAGTGCATGGAATCCAGTGGATATACCCAAGATGGCTCTGCCGCCGTGC 575 Query 70268 CACTGTTTGGCTCAGTTTTA---CTC---GTACGATGGCAAATTGTCATGCTTAATGTAT 70321 ||||| |||| |||||||| ||| || ||| || | || || ||||| Sbjct 576 CACTGCCTGGCGCAGTTTTATGTCTCACAGTCTCGTGGTGAACTCTCGTGTCAGCTGTAT 635 Query 70322 CAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTG 70381 ||| | ||||| |||||||| ||||| || ||||||||||||||| |||| | || | Sbjct 636 CAGCGCAGTGCGGACATGGGACTCGGCGTTCCCTTTAACATTGCATCCTATGCACTGCTC 695 Query 70382 ACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGC 70441 || ||||||| || || | || || ||| | || || || |||||| | ||| Sbjct 696 ACCTACATGATCGCCCATGTCACTGGGTACAAACCTGGTGACTTTGTGCACACCTTGGGC 755 Query 70442 GACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCG 70501 || ||||| || |||| ||||| | |||||| |||||| |||||| || ||||| Sbjct 756 GATGCTCATGTCTATTCGAATCATGTAGAGCCACTAAAGGAGCAACTAAGCCGCGAGCCA 815 Query 70502 AGACCTTTTCCCAAGCTGGAGTT 70524 | || ||||||||||| |||| Sbjct 816 CGCCCGTTTCCCAAGCTTCAGTT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740613943842920