Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7704 168 2e-36 seq2274 123 6e-23 seq355 120 7e-22 seq102 89.7 1e-12 >seq7704 Length=29863 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||| || ||||||||||| || || || || ||||| | || ||||| | ||| Sbjct 18552 TGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCCAATTGC 18493 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 18492 TTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 18433 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || |||||||| || Sbjct 18432 GCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTG 18373 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || |||||||| Sbjct 18372 AGGGTTTTAACGAAGATCTGCAT 18350 >seq2274 Length=37031 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | ||| || || || || || ||| Sbjct 30355 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTGCTTGCCA 30296 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| || || || || ||||| ||||| || || Sbjct 30295 GCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 30236 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| | || || ||||| ||||| | || Sbjct 30235 ACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 30176 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 30175 TTGACGAAAATCTGCATTTTG 30155 >seq355 Length=9390 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || ||||| | || || || || || ||||| || ||||| Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| ||||| || || || || || || || || || || || || ||||| || Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | ||| ||| |||||| || || | || || ||||| ||||| | |||||| ||||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 104552 ATCTGCATTTT 104562 ||||||||||| Sbjct 9210 ATCTGCATTTT 9200 >seq102 Length=36553 Score = 89.7 bits (98), Expect = 1e-12 Identities = 199/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 238589 CCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACG 238648 ||| ||||| || || ||| | ||| |||| || ||||| ||||| | ||| | || Sbjct 13057 CCTGTGGAACTCTGCACAGTTGCAACTGGTCAGGGAGGGCAAGATGCACGGATTCCTGCG 12998 Query 238649 AATGTATTGGGCTAAAAAGATACTTGAATGGACT-AGATCTCCAAAGGAAGCTCTTAGA- 238706 ||||| ||||| || || || || || |||||| ||| |||| || | || || || Sbjct 12997 CATGTACTGGGCGAAGAAAATTCTCGAGTGGACTGAGA-CTCCCGAGCAGGCG-TTGGAG 12940 Query 238707 TATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTA 238766 || | || || || ||||| ||| || || || |||||| || || ||||| Sbjct 12939 TACTGCATACTACTCAATGATAAGTACAGCCTGGATGGACGGGATCCCAATGGGTACGTC 12880 Query 238767 GGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGAGACCTATATT 238825 || || ||||||||| | |||| | || ||| ||||| ||| ||| | || || Sbjct 12879 GGCTGCATGTGGTCAGTTGGTGGCGTTCATGATCAGGGC-TGGAAGGAGCGCGACATCTT 12821 Query 238826 TGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||| || | |||||||||| ||| |||| ||| ||||||||||| Sbjct 12820 TGGCAAGATACGATACATGAACTATCAAGGCTGCAAGCGCAAATTTGATGT 12770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150689301580436