Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq14068 140 3e-28 >seq14068 Length=5400 Score = 140 bits (154), Expect = 3e-28 Identities = 253/363 (70%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| || || ||||| || ||| | || | | || || ||||| | |||| | Sbjct 3093 ACGCCAGTTGAACCGAAACCACCTTCACCACGCACAGTGTCATCCAGTTTATCGACCTGT 3152 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || ||| ||||| || | || || || || ||||| ||| Sbjct 3153 TCCAACTCTGGATA-GAAGATGCGTTCGCAAATGAATTGTGCGATGCGATCGCCGCGCTT 3211 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| |||||| ||| ||||| ||| |||||||| || |||| ||||||||||||| Sbjct 3212 CACCTCAAAATCGGTGT--CCGAATGGTTAAACAGCACGACTCCCAGGTTGCCGCGGTAG 3269 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | ||||| || ||||| || ||||||| ||| || ||||| || || || Sbjct 3270 TCCTCGTCCACAACGCCGGCACCCACATCAATGAAGTTCTTTACGGCCAGCCCAGAACGT 3329 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || ||||| ||||||||| | || || || | || | |||| ||||| | || | Sbjct 3330 GGGGCCACTCGGCCGTAGGAACCCTCCGGTACTTGGACTTGCAAATCCGTCTTGA-CAAT 3388 Query 5798 CGCC-GACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGC 5856 ||| ||| | |||||||| | |||| | ||||||| || || | ||||| || Sbjct 3389 GGCCTTACCCCGTGCAGGGACCGTAATGTCGTAGGCGCTGCGAAGATCAAAACCGGCGGC 3448 Query 5857 CCG 5859 || Sbjct 3449 ACG 3451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429802467009704