Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7704 127 2e-24 seq355 96.9 3e-15 seq2274 91.5 1e-13 >seq7704 Length=29863 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || || || || || | ||| |||||| | |||| | ||| || Sbjct 18559 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTC 18500 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| || | ||||||||||||||||| ||||||||||| | Sbjct 18499 CAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 18440 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || ||||| ||| || || | | ||||| |||| |||||||| || Sbjct 18439 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 18380 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 18379 ACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq355 Length=9390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| |||||| | || || | | ||||||||||| || ||||| || || Sbjct 9358 ATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATACCCTCCTT 9299 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | ||||| | | || || || | ||||| Sbjct 9298 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGAAGGTTCAACTTCCAAAGTGAT 9239 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | |||||||||||||||||||| Sbjct 9238 GGTCTTGCCAGTCAATGTTTTCACAAAGATCTGCAT 9203 >seq2274 Length=37031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || || | |||| |||||| Sbjct 30368 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 30309 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | |||||||||||||||||||| || ||||| | Sbjct 30308 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 30249 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| | | || |||| | || || || | |||||||| || Sbjct 30248 GATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCTT 30189 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || || |||||||| Sbjct 30188 GCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448021849836120