Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1210 158 2e-34 seq1998 114 2e-21 >seq1210 Length=4457 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | | || || ||||||||||| ||||| || |||||||| Sbjct 1209 GCTAAACGTCATCGAAAAGTTTTGCGTGACAACATCCAAGGCATCACAAAACCAGCTATT 1150 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || |||||||| || || ||||| | ||||| | | |||||||| | | Sbjct 1149 CGTCGTTTAGCCCGTCGTGGCGGCGTAAAGCGCATATCTGGTCTTATTTATGAAGAAACT 1090 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | ||| || || | |||||| || ||| || || Sbjct 1089 CGTGGTGTTTTGAAAGTGTTCTTGGAGAATGTCATTCGTGATGCCGTCACCTACACTGAA 1030 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||| || | |||||| | || ||||| |||| | |||||| Sbjct 1029 CACGCCAAGAGGAAGACTGTAACGGCAATGGATGTTGTTTATGCGCTGAAGAGACAAGGC 970 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || |||||||| ||||| Sbjct 969 CGCACCCTATACGGTTTTGGCGGTTAA 943 >seq1998 Length=6633 Score = 114 bits (126), Expect = 2e-21 Identities = 105/130 (81%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || | | | || ||||||||||| || ||||| ||||| |||| Sbjct 555 CGCCAAGCGTCATCGCAAGGTGT-TGCGTGATAACATCCAGGGTATCACTAAGCCGGCTA 613 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || ||||||||| |||| || || ||||||| |||| Sbjct 614 TTCGCCGTCTTGCTCGCCGTGGCGGTGTCAAGCGTATCTCCGGTCTGATCTATGAGGAGA 673 Query 16551 TTCGTGATGT 16560 ||||| ||| Sbjct 674 CTCGTGGTGT 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79031252005431