Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq5175 147 4e-31
seq17070 114 3e-21
seq7356 98.7 2e-16
>seq5175
Length=835
Score = 147 bits (162), Expect = 4e-31
Identities = 268/390 (69%), Gaps = 2/390 (1%)
Strand=Plus/Plus
Query 7318 TCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATT 7377
|||||||| | ||||| | | | ||||| ||||| | ||| || || || || ||
Sbjct 369 TCATCTTGTCTGAACATTATTATCATATTTGCGTTATCACGAATAAGATGTTTCGGGATA 428
Query 7378 CGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAA 7437
||||||| |||||||| | || || |||| || || || |||||||||||||||
Sbjct 429 TGTGTATAGGTTTGACACAAGTAAAATGAATCAATATTATTATGACGACCCATGCAGAAA 488
Query 7438 AAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTA 7497
| | ||| | || |||||||||||| |||||||| || || ||||| | || |||
Sbjct 489 TATGAACGGATATTATTCTGTTTTTCACATGCAACATCATCGAAAATCATAATTGAATTA 548
Query 7498 GGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATA 7557
||||| || | || | || | ||||| ||| ||| || || | || |||
Sbjct 549 TTTTTAGCTTCGTTGGGTGGTAAAACTGTTTCATTTTCCGAGAAAGTATAGTACCCCATA 608
Query 7558 CCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTT 7617
|| | ||| |||| | ||| | |||| ||| |||||| ||||| | | | ||||
Sbjct 609 CCTTTTATCGGTTTCAATAGTTTTTCCAAATACTCATACTTGGGTTGATACAAACTCTTT 668
Query 7618 GAGTAAAGATATATATTCTCAAACCTCAAACCGTTT-GGATGTACAATAAGAGACAGCAG 7676
||| | ||||| || |||||||| | ||||||||| || | | | |||| ||||
Sbjct 669 GAGAATAGATAAATGTTCTCAAATTTTAAACCGTTTGGGCTCTCGATTAAG-CCGAGCAT 727
Query 7677 AGCATTCGTCTTTCCACAGTTTGATGGCCC 7706
||| || || |||||||| ||||| ||
Sbjct 728 TAGATTAGTTTTCCCACAGTTGGATGGTCC 757
>seq17070
Length=6006
Score = 114 bits (126), Expect = 3e-21
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| ||| ||||| || | ||||||||||||||| || | | | ||
Sbjct 2384 ACATGATCATTATATATATGTTTTATATTCATTTCATCTTGTTTAAAAATAATAATTAAA 2443
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| |||||||| | ||| | || || ||||| |||||| |||||||| | ||||||
Sbjct 2444 TTAGCATTATCACGAATTAAATGTTTTGGTATCTTTGTATATGTTTGACATAAATAGAAA 2503
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
|||| || ||| || |||||||| || ||| || || | || || ||||| ||
Sbjct 2504 GAATCAATATGCTTATGACGACCCATACAAAAATAATCTCTTATTGTATTTTGTTTATCG 2563
Query 7465 CAAGCAACATCGTCAAATATCAT 7487
|| |||||| |||||||||||
Sbjct 2564 CAGATAACATCATCAAATATCAT 2586
Score = 100 bits (110), Expect = 6e-17
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531
|||||| |||||| | || || |||| |||||| ||||||||||| | ||| | |
Sbjct 5397 ATAAAACAAATTATATAATACATTATAGAAATTTACAACAATGTTTAAAACATGGTATTG 5338
Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591
|| | | |||||||| | | || ||||| | |||||||| ||| | || |||||
Sbjct 5337 TTTTAACTAAAATACATAGAATATTACAATTTAATCAATCAGATTGGTTAAAGAAATATA 5278
Query 4592 TCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651
| ||| | |||| | ||| | | || | ||||| || |||||||| |||| ||
Sbjct 5277 TTGATTATAATAATCATTTTAGAACATTGGCCACAAATGACTTTGAAAAAAATTTTTTTA 5218
Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694
|| | | || ||||| || | ||| ||||| ||||| |||||
Sbjct 5217 AACTTCTTAACAATGCTGTATATGGCAAGACCATGGAAAATGT 5175
>seq7356
Length=2681
Score = 98.7 bits (108), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 3367 GATAAAGTTTATGATCATTGTCACTTTACGGGTAACTACAGAGATGCTGCACATAAATCC 3426
||||| ||| | ||||||||||| || || ||| | ||||||| |||||||||||
Sbjct 2156 GATAAGGTTAAAGATCATTGTCATTTAACTGGTGAATACAGAGGAGCTGCACATAATGAA 2215
Query 3427 TGTAACGTTAATTATCAAAAATCTACCATTATCCCAGTTGTCTTTCATAATTTATCCGGC 3486
||||| | |||||| ||| ||| | || ||||| | | ||||||||||| || |
Sbjct 2216 TGTAATTTAAATTATAAAATATCAAATTTTTTCCCAATATTTTTTCATAATTTTTCTGCA 2275
Query 3487 TATGATTCCCACTTCATAATTAAGTCCTTAGCTACAGTATTTGAAGGTGAAATTTCATTA 3546
||||||| || || | | ||| ||| | || | ||||||| ||||| || ||
Sbjct 2276 TATGATTGTCATTTGTTTGTAAAGGAATTATCAAC---AATTGAAGGCGAAATAACAATA 2332
Query 3547 CTACCGATCAATAAAGAACGTTACATTTCT 3576
|||| || | |||||| ||| || |||
Sbjct 2333 ATACCAATTAGCAAAGAATTTTATATATCT 2362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97918476641118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |