Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq5175 147 4e-31 seq17070 114 3e-21 seq7356 98.7 2e-16 >seq5175 Length=835 Score = 147 bits (162), Expect = 4e-31 Identities = 268/390 (69%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 7318 TCATCTTGACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATT 7377 |||||||| | ||||| | | | ||||| ||||| | ||| || || || || || Sbjct 369 TCATCTTGTCTGAACATTATTATCATATTTGCGTTATCACGAATAAGATGTTTCGGGATA 428 Query 7378 CGTGTATAAGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAA 7437 ||||||| |||||||| | || || |||| || || || ||||||||||||||| Sbjct 429 TGTGTATAGGTTTGACACAAGTAAAATGAATCAATATTATTATGACGACCCATGCAGAAA 488 Query 7438 AAAGCTTTGATGTGATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTA 7497 | | ||| | || |||||||||||| |||||||| || || ||||| | || ||| Sbjct 489 TATGAACGGATATTATTCTGTTTTTCACATGCAACATCATCGAAAATCATAATTGAATTA 548 Query 7498 GGCTTAGCATCTTCAGGCTTGATTACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATA 7557 ||||| || | || | || | ||||| ||| ||| || || | || ||| Sbjct 549 TTTTTAGCTTCGTTGGGTGGTAAAACTGTTTCATTTTCCGAGAAAGTATAGTACCCCATA 608 Query 7558 CCATCAATCTGTTTAAGCAGTGTCTCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTT 7617 || | ||| |||| | ||| | |||| ||| |||||| ||||| | | | |||| Sbjct 609 CCTTTTATCGGTTTCAATAGTTTTTCCAAATACTCATACTTGGGTTGATACAAACTCTTT 668 Query 7618 GAGTAAAGATATATATTCTCAAACCTCAAACCGTTT-GGATGTACAATAAGAGACAGCAG 7676 ||| | ||||| || |||||||| | ||||||||| || | | | |||| |||| Sbjct 669 GAGAATAGATAAATGTTCTCAAATTTTAAACCGTTTGGGCTCTCGATTAAG-CCGAGCAT 727 Query 7677 AGCATTCGTCTTTCCACAGTTTGATGGCCC 7706 ||| || || |||||||| ||||| || Sbjct 728 TAGATTAGTTTTCCCACAGTTGGATGGTCC 757 >seq17070 Length=6006 Score = 114 bits (126), Expect = 3e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| ||| ||||| || | ||||||||||||||| || | | | || Sbjct 2384 ACATGATCATTATATATATGTTTTATATTCATTTCATCTTGTTTAAAAATAATAATTAAA 2443 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || |||||||| | ||| | || || ||||| |||||| |||||||| | |||||| Sbjct 2444 TTAGCATTATCACGAATTAAATGTTTTGGTATCTTTGTATATGTTTGACATAAATAGAAA 2503 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 |||| || ||| || |||||||| || ||| || || | || || ||||| || Sbjct 2504 GAATCAATATGCTTATGACGACCCATACAAAAATAATCTCTTATTGTATTTTGTTTATCG 2563 Query 7465 CAAGCAACATCGTCAAATATCAT 7487 || |||||| ||||||||||| Sbjct 2564 CAGATAACATCATCAAATATCAT 2586 Score = 100 bits (110), Expect = 6e-17 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531 |||||| |||||| | || || |||| |||||| ||||||||||| | ||| | | Sbjct 5397 ATAAAACAAATTATATAATACATTATAGAAATTTACAACAATGTTTAAAACATGGTATTG 5338 Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591 || | | |||||||| | | || ||||| | |||||||| ||| | || ||||| Sbjct 5337 TTTTAACTAAAATACATAGAATATTACAATTTAATCAATCAGATTGGTTAAAGAAATATA 5278 Query 4592 TCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651 | ||| | |||| | ||| | | || | ||||| || |||||||| |||| || Sbjct 5277 TTGATTATAATAATCATTTTAGAACATTGGCCACAAATGACTTTGAAAAAAATTTTTTTA 5218 Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || | | || ||||| || | ||| ||||| ||||| ||||| Sbjct 5217 AACTTCTTAACAATGCTGTATATGGCAAGACCATGGAAAATGT 5175 >seq7356 Length=2681 Score = 98.7 bits (108), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 3367 GATAAAGTTTATGATCATTGTCACTTTACGGGTAACTACAGAGATGCTGCACATAAATCC 3426 ||||| ||| | ||||||||||| || || ||| | ||||||| ||||||||||| Sbjct 2156 GATAAGGTTAAAGATCATTGTCATTTAACTGGTGAATACAGAGGAGCTGCACATAATGAA 2215 Query 3427 TGTAACGTTAATTATCAAAAATCTACCATTATCCCAGTTGTCTTTCATAATTTATCCGGC 3486 ||||| | |||||| ||| ||| | || ||||| | | ||||||||||| || | Sbjct 2216 TGTAATTTAAATTATAAAATATCAAATTTTTTCCCAATATTTTTTCATAATTTTTCTGCA 2275 Query 3487 TATGATTCCCACTTCATAATTAAGTCCTTAGCTACAGTATTTGAAGGTGAAATTTCATTA 3546 ||||||| || || | | ||| ||| | || | ||||||| ||||| || || Sbjct 2276 TATGATTGTCATTTGTTTGTAAAGGAATTATCAAC---AATTGAAGGCGAAATAACAATA 2332 Query 3547 CTACCGATCAATAAAGAACGTTACATTTCT 3576 |||| || | |||||| ||| || ||| Sbjct 2333 ATACCAATTAGCAAAGAATTTTATATATCT 2362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97918476641118