Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2144 215 5e-51 seq2274 122 8e-23 seq7704 111 1e-19 >seq2144 Length=13752 Score = 215 bits (238), Expect = 5e-51 Identities = 731/1122 (65%), Gaps = 50/1122 (4%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || ||||||||||| || | || ||| || | || | ||| || ||| || Sbjct 4586 TGATTCACAACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAG 4527 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||| ||||| || ||||| |||| || || || |||| ||| || ||||| || Sbjct 4526 GGTTCGAAAGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCG 4467 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | | ||||| |||| |||||||| | || | ||||| || | |||| ||| Sbjct 4466 ATAAGCAGAGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGAGTTTCGCCCAGTCC 4407 Query 145235 CATAGCGAAGTCGG--CCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGG 145292 || || || || ||| | | |||||| || ||||| | ||| |||| ||| | | Sbjct 4406 CAGAGATTTGTGGGTACCTTA--TTCCACATATCATACTGGAGAATACCCTTGCTAACTG 4349 Query 145293 GGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCA 145352 | || || | | ||| || |||| | | || ||||| || || || |||| Sbjct 4348 GACTTCCCTCATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCA 4289 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG-CAGCAT---CGCTTCATCG 145408 ||||| | ||||| || ||| ||| | ||||||| ||| | ||| | ||| Sbjct 4288 ATGCGCCATAGTAAATGGTTTCG--AATAT--CTGTTGATTCAGAAGACACGCCTTATCA 4233 Query 145409 CTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCG 145468 ||||| || || |||| | | |||||||| || || || || | ||| | || Sbjct 4232 CTCTCATAGGGATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCA 4173 Query 145469 ATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGG 145525 || || |||||| | | |||| || | ||| ||| | ||| || ||| Sbjct 4172 ATTGGACGATGTCTTAAGTTGGATTTCTTAGCC---TCGGGCAGAGGGTAGTAATTGATA 4116 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAG 145585 ||||| || || ||||||||| || | ||| || | | | ||| ||||| Sbjct 4115 TCGATGATCTTGTTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAG 4056 Query 145586 TCAAACCGAGCCTC--GTCA-ACGACCACACAGCTATTGACGGCGATCGACGCCAAATTA 145642 || || ||| || |||| || |||||| || ||||| |||||||| Sbjct 4055 TCGTACGTCTTCTCCGGTGTTACGAACA------TATTGAGAGCTATCGATGCCAAATTG 4002 Query 145643 CAAACTGCCGTCTCCTCGGCGTCGCTGTATTGT--ACGATCTCGGCGCACAAATTGCTAC 145700 ||||| || |||| || | || || | || | || || || | |||||| || || | Sbjct 4001 CAAACAGCAATCTCATCTG-GT-GCAGAATACTCAACAATTTCAGTGCACAAGTTACTGC 3944 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 |||| || || |||| |||||| || || || || | ||| |||| |||||| |||||| Sbjct 3943 ATTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCA 3884 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT-------AAAACGGTGCAAGTCC 145813 |||||||| |||||||||||| || | ||| | ||| ||| || || | Sbjct 3883 TGTACGGTGTGCCAGTCTCCACTTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCT 3824 Query 145814 TGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCA 145873 || | ||| |||| || ||||| | |||||||| | |||||||||||| Sbjct 3823 TGATAA--CACGATTTGCT-----CGACCCTCCTTCTCGTATTTTGTATAGAGCTCCTCA 3771 Query 145874 AACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCAT 145933 ||| ||| | ||| | || || |||||||||| || |||||||| ||||| Sbjct 3770 AACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCGGGCACATCAGTGACCAA 3711 Query 145934 ACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAG 145993 | | ||||| | ||||||| ||||||||||||||| | |||||| || || | || Sbjct 3710 TCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCCACAGGGCATAGAACAGA 3651 Query 145994 TCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGAT 146052 || || || ||||| || |||| ||| | || ||| || | | ||| Sbjct 3650 TCCCGAGCACGATGTTCCTCTTTGCCAGTGTTCTTCTTAAGATCCAAGAACTC-AAAGAC 3592 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || | ||||| || || | || | ||| | ||||| || ||| ||||||||| Sbjct 3591 ATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTG 3532 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||| | |||| ||| |||||||| || | || ||| || Sbjct 3531 ATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGG 3490 >seq2274 Length=37031 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | ||| | ||||| | | ||| | Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || |||||||||||||| Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 >seq7704 Length=29863 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | || ||||| || ||||||||||||||| Sbjct 18576 CCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAG 18517 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||||| || |||| ||||||||||| || ||||| Sbjct 18516 AGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18457 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | ||||| | | |||| Sbjct 18456 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 18398 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| ||||| |||||||| Sbjct 18397 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471729197009280