Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq323 136 3e-27
seq34587 107 1e-18
seq355 93.3 3e-14
seq7704 86.0 4e-12
>seq323
Length=8557
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 7037 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 6978
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6977 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6943
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4707 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4648
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 4647 GGTTATATTTAG 4636
>seq34587
Length=2265
Score = 107 bits (118), Expect = 1e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433
|||||||| ||||| || || || |||||| | | || |||||||||||| | || ||
Sbjct 2048 AACGAGCGTTTCATTGTGAATGGCTCGCATGA-TGTGAACAAGCTGCAGGATCTGCTCGA 1990
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTT-A 6492
||||| ||||||||||||||||| |||| ||| || ||||| || || | ||| ||| |
Sbjct 1989 TGGCTTCATTCGCAAGTTTGTGCTCTGTCCGGAGTGTGATAATCCTGA-AACGAACTTAA 1931
Query 6493 TTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552
|| || | |||| | |||||||| || ||||| || || |||| |||||||
Sbjct 1930 CCGTTTCGGCTAAGAATCAAACCATCTCGCAATCATGCAAGGCATGTGGTTTCCATGGCC 1871
Query 6553 AGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
| || | | || || |||| || | ||| | |||||||| |||
Sbjct 1870 TGTTGAAGGTCAATCATAAGGTCAATACGTACATTGTTAAGAATCCACCA 1821
Score = 105 bits (116), Expect = 4e-18
Identities = 109/141 (77%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294
|||||||||| ||||| ||||| || || |||||| | ||||||||| | ||||| ||
Sbjct 2265 AGGTCGAGGGCAAGGGTAACGGCATCAAGACCGTCCTGGTCAACATGGCCGAAGTAGC-- 2208
Query 6295 AGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352
| |||| | |||||||| || || || || || || || || || |||||| | || ||
Sbjct 2207 ACGCGCCATTGGACGCCCAGCAACTTATCCAACCAAGTACTTTGGTTGCGAATTGGGAGC 2148
Query 6353 TCAGACGCAGTTTGATCACAA 6373
||||||||||| ||||| ||
Sbjct 2147 CCAGACGCAGTTCGATCATAA 2127
>seq355
Length=9390
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189
|| || || ||||| || |||| | ||| | || || | || |||||||| || ||
Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331
Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249
|| || || ||||| | ||||| || || ||||| ||||| |||||||||||
Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271
Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309
| || || | ||||||||| || || || || || || ||||| |||||||| ||
Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211
Query 38310 ATCTGCATGTT 38320
|||||||| ||
Sbjct 9210 ATCTGCATTTT 9200
>seq7704
Length=29863
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | || | |||||| || | || ||| || ||||| |||||||| ||
Sbjct 18577 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGA 18518
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| | || | || || ||||| || || ||||| || | || || ||||| | ||
Sbjct 18517 GAGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGG 18458
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268
| |||||||||||| ||| || || ||||| | || ||||| | || ||| |
Sbjct 18457 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGACGGTTCGA 18399
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || |||||||| | |||||| ||||| ||||||||
Sbjct 18398 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334750982382677
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |