Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq323 136 3e-27 seq34587 107 1e-18 seq355 93.3 3e-14 seq7704 86.0 4e-12 >seq323 Length=8557 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 7037 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 6978 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6977 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6943 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4707 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4648 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4647 GGTTATATTTAG 4636 >seq34587 Length=2265 Score = 107 bits (118), Expect = 1e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 |||||||| ||||| || || || |||||| | | || |||||||||||| | || || Sbjct 2048 AACGAGCGTTTCATTGTGAATGGCTCGCATGA-TGTGAACAAGCTGCAGGATCTGCTCGA 1990 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTT-A 6492 ||||| ||||||||||||||||| |||| ||| || ||||| || || | ||| ||| | Sbjct 1989 TGGCTTCATTCGCAAGTTTGTGCTCTGTCCGGAGTGTGATAATCCTGA-AACGAACTTAA 1931 Query 6493 TTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552 || || | |||| | |||||||| || ||||| || || |||| ||||||| Sbjct 1930 CCGTTTCGGCTAAGAATCAAACCATCTCGCAATCATGCAAGGCATGTGGTTTCCATGGCC 1871 Query 6553 AGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 | || | | || || |||| || | ||| | |||||||| ||| Sbjct 1870 TGTTGAAGGTCAATCATAAGGTCAATACGTACATTGTTAAGAATCCACCA 1821 Score = 105 bits (116), Expect = 4e-18 Identities = 109/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 |||||||||| ||||| ||||| || || |||||| | ||||||||| | ||||| || Sbjct 2265 AGGTCGAGGGCAAGGGTAACGGCATCAAGACCGTCCTGGTCAACATGGCCGAAGTAGC-- 2208 Query 6295 AGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 | |||| | |||||||| || || || || || || || || || |||||| | || || Sbjct 2207 ACGCGCCATTGGACGCCCAGCAACTTATCCAACCAAGTACTTTGGTTGCGAATTGGGAGC 2148 Query 6353 TCAGACGCAGTTTGATCACAA 6373 ||||||||||| ||||| || Sbjct 2147 CCAGACGCAGTTCGATCATAA 2127 >seq355 Length=9390 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 || || || ||||| || |||| | ||| | || || | || |||||||| || || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || || || ||||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | || || | ||||||||| || || || || || || ||||| |||||||| || Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 38310 ATCTGCATGTT 38320 |||||||| || Sbjct 9210 ATCTGCATTTT 9200 >seq7704 Length=29863 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | || ||| || ||||| |||||||| || Sbjct 18577 ACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGA 18518 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || ||||| || || ||||| || | || || ||||| | || Sbjct 18517 GAGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGG 18458 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | || ||||| | || ||| | Sbjct 18457 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGACGGTTCGA 18399 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || |||||||| | |||||| ||||| |||||||| Sbjct 18398 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334750982382677