Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2144 488 7e-133 seq19922 170 2e-37 >seq2144 Length=13752 Score = 488 bits (540), Expect = 7e-133 Identities = 1248/1886 (66%), Gaps = 34/1886 (2%) Strand=Plus/Minus Query 61837 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 61896 || ||| || | || || ||||| | | || ||| || || || || ||||| ||||| Sbjct 4935 ATTCTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACAT 4876 Query 61897 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 61956 ||| ||||| ||||| |||| | | ||||| || || || || |||| | Sbjct 4875 TCCTGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATT 4816 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 || || |||| ||| ||||| | |||||||||||||| ||||| ||||| | ||||| Sbjct 4815 TGGTTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGC 4756 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT---CGCTT 62073 |||||||| || | | |||| | |||||||||| || ||||| | | ||| Sbjct 4755 TGCCATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC-- 4698 Query 62074 AATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATT 62130 | || || |||| |||| | || || ||||| |||| | ||| || || ||| Sbjct 4697 -ACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATT 4639 Query 62131 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62190 || || ||||||| ||| || | ||||||| | | | | | ||| |||| || Sbjct 4638 TTTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCAC 4579 Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 || ||||| |||||||||| |||| | ||||| || || || || ||||| | Sbjct 4578 AACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAA 4519 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||| |||||||| |||| || || || || ||||| || ||||| ||||| | | | Sbjct 4518 AGATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAG 4459 Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGA 62368 | ||| | | |||| | || || || || || ||| ||| ||| | ||| ||| Sbjct 4458 AGAATTACGCACTCCGTGCTTGCTTATCTTCTCCTT--GAGTTTCGCCCAGTCCCAGAGA 4401 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 62427 | | ||||| || |||||||| || || | | || || Sbjct 4400 TTTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCC 4341 Query 62428 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 62487 | |||| || || || | || || |||||||| || ||||| || || || ||||| || Sbjct 4340 T-CATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCC 4282 Query 62488 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGG 62547 || |||||||||||||| |||| | ||| ||| ||| | || ||| | || Sbjct 4281 ATAGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGCCTTATCACTCTCATAGGG 4222 Query 62548 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 ||| | | ||| || || ||||| | ||||||||| ||||| || || || | ||| Sbjct 4221 ATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATG 4162 Query 62608 TCTCTTATTAGAGATTTC--AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 ||| | | | | |||||| ||| || || | ||| || ||||| ||||| || || || Sbjct 4161 TCT-TAAGTTG-GATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTG 4104 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 || | ||| || || | ||| || || || || || | ||| || | | Sbjct 4103 TTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTC 4044 Query 62726 TC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62782 || | |||| ||||| || | || | ||||||| ||| ||||| || | ||||| Sbjct 4043 TCCGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCT 3984 Query 62783 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 | | | ||| | | || |||||||| | ||||| || || || || || | |||| Sbjct 3983 GGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTT 3924 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 ||||| || ||||| |||||||| |||||| | || ||| | || || ||||| || Sbjct 3923 TGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCC 3864 Query 62903 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCT 62961 | || || || || || || ||| | | | ||||||| || | | |||||| || Sbjct 3863 ACTTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTG---CT 3807 Query 62962 CTTTTCTCTTTC--GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 | ||| ||| |||| |||||| | || |||| || |||||||||| | Sbjct 3806 CGACCCTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCG 3747 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 ||||| ||||| | | ||| ||||||| ||||| || | | | | ||| || ||| Sbjct 3746 AGTCCTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTC 3687 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||||| | ||| || ||||| || || ||| || ||||| | | | ||||||||| || Sbjct 3686 ATAAACAAATCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTT 3628 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || || ||||| |||||||| | |||| | | | ||| |||||||| || || | ||| Sbjct 3627 GCCAGTGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTA 3568 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | ||||||| | |||| || |||||||| | || | || || || Sbjct 3567 AATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTT 3508 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 | | ||||||| ||| |||| | |||||||||||||||||||| || || | | Sbjct 3507 AAATACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGT 3448 Query 63319 TCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 ||| |||| ||||| | | | ||| ||||| || || ||||| || ||||| Sbjct 3447 TCCCTTGGCCCGAATGCAATGCACATT--CAGACCAATACCACCTGCTGACTTTGAGATC 3390 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 | || || | | | | | | |||| ||||| || ||| | |||| | || Sbjct 3389 ATCGCACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGG 3330 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 ||||| || ||||| || | || | ||| | || || | || || || || Sbjct 3329 AGAAAGCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCA 3270 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || || || | ||| ||||| | |||||| ||||| | || || || ||||| | Sbjct 3269 TGTGTGAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCT 3210 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 ||| || || | || || ||||| | ||||||||| || | |||| | | ||| Sbjct 3209 CCATGTATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCA 3150 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 || ||||| ||||| || ||| |||||||| || || |||||||| || || ||| Sbjct 3149 TTGATTTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATAGCCAAAA 3090 Query 63677 TCTCGTTCGTAAATAATAACCGAGTT 63702 || || ||||| ||||| | ||||| Sbjct 3089 TCACGATCGTATATAATGGCAGAGTT 3064 >seq19922 Length=1369 Score = 170 bits (188), Expect = 2e-37 Identities = 360/535 (67%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 || |||||||| || || |||||||| | || | || || || || || || ||| Sbjct 1214 GCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCG 1155 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 32783 ||||| || |||||||| || ||||| || || |||||||| || ||||| || Sbjct 1154 GGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATG 1095 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA--TC 32840 ||||| || || ||||||||||| | | ||| ||| | || || || | | || Sbjct 1094 CCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGATC 1035 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || |||||||||| ||||| || ||| ||||| || || || ||||| ||| Sbjct 1034 CAAGACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAG 975 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 || |||| | || ||| || || || || || | | || ||||||||| Sbjct 974 AGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCC 915 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 || || | || || ||||| || || || || || ||||| | ||||| || || || Sbjct 914 GAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGC 855 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 ||||| | || || || | | ||| ||||| || || |||||| ||| ||||| Sbjct 854 ACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAG 795 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || ||||| |||||| || || | || | ||||||| | ||| || | Sbjct 794 AAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTC 735 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCtttt 33195 || || || |||| ||||||||| ||||| ||||| ||||| || || ||||||| Sbjct 734 ATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633251290133200