Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq102 140 3e-28 seq7704 114 1e-20 >seq102 Length=36553 Score = 140 bits (154), Expect = 3e-28 Identities = 207/291 (71%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 ||| || ||||| ||||| |||||||| || | || ||||||| || | ||| || Sbjct 12775 AAATTTGCGCTTGCAGCCTTGATAGTTCATGTATCGTATCTTGCCAAAGATGTCGCGCTC 12834 Query 51048 TTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106 || | | |||| || || || || | || ||||||||| || || || || || | Sbjct 12835 CTTCCA-GCCCTGATCATGAACGCCACCAACTGACCACATGCAGCCGACGTACCCATTGG 12893 Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166 |||| || ||||||| |||||| | ||| || || | |||| || |||| ||| | Sbjct 12894 GATCCCGTCCATCCAGGCTGTACTTATCATTGAGTAGTATGCAGTACTCCAACGCCTGCT 12953 Query 51167 CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCA 51226 | | | | ||||| || | ||||||||| |||||||||||||||| | | ||||||| Sbjct 12954 CGGGAGTCTCAGTCCACTCGAGAATTTTCTTCGCCCAGTACATGCGCAGGAATCCGTGCA 13013 Query 51227 TCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||| | || ||| || || |||||||||| ||||||| Sbjct 13014 TCTTGCCCTCCCTGACCAGTTGCAACTGTGCAGAGTTCCACAGGTCGTCGT 13064 >seq7704 Length=29863 Score = 114 bits (126), Expect = 1e-20 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || || || | || ||||| ||||||| | || || || || Sbjct 18347 ACGATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 18406 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || ||||| |||| |||| || | ||| ||||||||||| ||||| || Sbjct 18407 TCGGATACCATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCC 18462 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | || ||||| ||||| ||||| ||||||| |||||| | ||| Sbjct 18463 AGATCAGCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGA 18522 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| ||||| || || | || || ||||| Sbjct 18523 TTACAACATTCAGAAAGAGTCAACATTGCACTTGGTGCT 18561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433074149280605