Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2144 212 5e-50 seq7704 141 8e-29 seq355 114 1e-20 seq2274 111 1e-19 seq42801 102 7e-17 >seq2144 Length=13752 Score = 212 bits (234), Expect = 5e-50 Identities = 718/1100 (65%), Gaps = 49/1100 (4%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| || || ||||| | |||||| | ||||||||||| ||||| | ||| ||||| || Sbjct 4932 CTTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCC 4873 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 |||||| | ||| |||||| | | | ||||| | |||| | | || | || Sbjct 4872 TGTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATTTGG 4813 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 || | | | ||||||||| ||||||||||||||||| || | || ||||| || || Sbjct 4812 TTCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGC 4753 Query 128958 CATACCAATCAAATTTTTCACTTTC-----ATTTCCCACACCGTTTTGTAAAGCTCTCTC 129012 ||| | ||| | ||||| |||||||| || || || || || || | | Sbjct 4752 CAT-----TTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGC 4698 Query 129013 ACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTT 129072 || | || || || | ||| ||||| || | | ||| |||| || |||| ||| Sbjct 4697 ACATTTTGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTT 4638 Query 129073 CGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATT 129132 ||| | || | |||| | ||||| | | | ||| ||| | | || | Sbjct 4637 TTCATATCATCATCCCACAAGTCCAGTTCGGTTAGATCACGCAACAAATGATGATTCACA 4578 Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || ||||| || || | || || || | ||| ||||| ||| | || || || Sbjct 4577 ACCTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAAA 4518 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCAT--GTAAGCCACGCAAA 129250 |||||||| || || | ||| || || || | || || ||||| || | | ||| | Sbjct 4517 GATTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGATAAGCAGA 4458 Query 129251 GCGAGTTTCGCAAACCGTGCT-GTTTAATGTCtttt--tttAATTGTGTCCAGTCCCACA 129307 | | || |||| ||||||| | ||| |||| | || | || | ||||||||| | Sbjct 4457 G--AATTACGCACTCCGTGCTTGCTTA---TCTTCTCCTTGAGTTTCGCCCAGTCCCAGA 4403 Query 129308 TCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGG 129367 ||||||| | |||||||| || || || | |||||| || | ||||| Sbjct 4402 GATTTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTC 4343 Query 129368 AAAAGTAGGAATCGTGCACGCCGTAAGCTTTT---GCCAATTCGCAACTCGCTTCCAATG 129424 |||| || | | ||| | |||| |||| || || || |||||||||| Sbjct 4342 CCTCATAGGTCTCATACGTGCCAT---CTTTCTCAGCCAGCTCACAGCTGGCTTCCAATG 4286 Query 129425 CGCCAAAATAAATTGTTTCGGCAATTT-TGGTG-TTCA----ACACTTTGGCCTGGTCGC 129478 ||||| | ||||| |||||| ||| | || || |||| |||| |||| || | Sbjct 4285 CGCCATAGTAAATGGTTTCG--AATATCTGTTGATTCAGAAGACAC----GCCTTATCAC 4232 Query 129479 TTTCGTACGGCATAC-GCA---ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACA 129534 | || || || |||| ||| | || |||| | || || | ||||||| || | Sbjct 4231 TCTCATAGGG-ATACCGCATTAAAAT--CAAA-GCATCTGCAAGTCCTTGAACTCCAATT 4176 Query 129535 CCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATG 129594 || || || |||||| || |||||||| | ||| || || ||||| ||||| Sbjct 4175 CCAATTGGACGATGTCTTAAGTTGGATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATA 4116 Query 129595 TCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAA 129654 || || || ||||| || || ||| ||||| || || || | ||| | | | |||| Sbjct 4115 TCGATGATCTTGTTCAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAG 4056 Query 129655 TTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAG 129714 | |||| | || | || ||| || || ||||| | ||||| ||||||||||| Sbjct 4055 TCGTAC--GTCTTCTCCGGTGTT-ACGAACATATTGAGAGCTATCGATGCCAAATTGCAA 3999 Query 129715 ACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTA 129774 || ||| | || | | || ||||| |||||||| | |||||| ||||| |||| Sbjct 3998 ACAGCAATCTCATCTGGTGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTA 3939 Query 129775 ATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTAC 129834 || ||||||| || | ||| || || || ||| || | ||| ||| | | ||||||| Sbjct 3938 ATTGTGCCCACATTTTGTTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTAC 3879 Query 129835 GGCGTGCCCGTTTCGACTTG 129854 || ||||| || || ||||| Sbjct 3878 GGTGTGCCAGTCTCCACTTG 3859 >seq7704 Length=29863 Score = 141 bits (156), Expect = 8e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || |||||||| | || ||||| || |||||||||| || ||| | | Sbjct 18349 GATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 18408 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 18409 GGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 18468 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || ||||| ||||| || || || ||| |||||| ||||||||||||| Sbjct 18469 GCAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGATTACAA 18528 Query 22398 CATTCAAAAAGAATCCAC 22415 |||||| ||||| || || Sbjct 18529 CATTCAGAAAGAGTCAAC 18546 >seq355 Length=9390 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| || || || || || ||||| | ||||| ||| | Sbjct 9200 AAAATGCAGATCTTTGTGAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCT 9259 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || | || ||||| ||||||||||||||||| || || ||| Sbjct 9260 TCCGACACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGTATCCCCCCAGAT 9319 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | |||||| ||| || | || || ||| Sbjct 9320 CAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACTCTGTCGGACTAC 9379 Query 22396 AACATTCAAAA 22406 ||||| || || Sbjct 9380 AACATCCAGAA 9390 >seq2274 Length=37031 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || || || || || || |||| | || ||||| | Sbjct 30156 AAAATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCA 30215 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || |||| || || || ||||||||||||||||| || ||| Sbjct 30216 TCTGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCAGAT 30275 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | |||||| ||||| | || || ||| Sbjct 30276 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTAC 30335 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || || || | || |||| || ||| Sbjct 30336 AACATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGT 30386 >seq42801 Length=1186 Score = 102 bits (112), Expect = 7e-17 Identities = 476/745 (64%), Gaps = 23/745 (3%) Strand=Plus/Minus Query 48542 ATCGCCATTGTCAGCGTCGATTTCCCATGCAAAGAGGCCTCCTAAATTGTTGTCTAGCAC 48601 |||||| ||||| |||||||| ||||| | || ||||| || | | || || | ||| Sbjct 760 ATCGCCGTTGTCCGCGTCGATCTCCCAGGAGAATAGGCCGCCCAGCTGCTTATCCAACAC 701 Query 48602 GTATTGACCTTTGTCCATAACAGATTGTACACTATCGTAACTGATGAGATCACCACTGTC 48661 ||| | |||||| || | || | || || | |||| ||||| || || Sbjct 700 GTACTTGCCTTTGGCCTGCCCCGAGCGGGCATCGTCAAAGGTGATCAGATCGCCGGTGGT 641 Query 48662 CGCTTTGGTCACGTACGCTGCTTTAGCGGTGTCGTCATACCTATATTTGTATTCGT---T 48718 | |||| |||||| | |||| || ||| |||| || | || | | ||| | Sbjct 640 AGGTTTGAACACGTAAGGCGCTTCCGCCGTGGCGTCGTAGGTGTACTGCCACTCGCCGCT 581 Query 48719 AAT--ACGCGATTGA-ATGTGCCTATAGTCGACGACACCGTCCTCCCACGTCCCGGTAAC 48775 || || | | | || || | ||||| |||| |||| |||||| || || | || Sbjct 580 CATGAACTGGCTGGCGATCTGGCGGTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGAC 521 Query 48776 GGGGCCGACGGCCACACCGCTAAAGGGGTTATCGTCGCTGTAATCGAGGACACCGGTCCA 48835 || ||| ||| ||| | || || | | || ||| || || |||||||| Sbjct 520 CGGCCCGGTGGCGGTGCCGGTGAACGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCA 461 Query 48836 TCCGCGACCGTACATTGCCACACCCAATACAATTTTGTTGGGTCTCACGCGTTGGTCCAA 48895 ||||| || ||||| || || | || || ||| || | |||| || ||| Sbjct 460 ACCGCGGCCATACATGGCGGTGCCGACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAG 401 Query 48896 AAGAGCATTCACCGCAAAATCCGTAGTGTAA----TGTTCGTTTACATTCCATTTCGGAG 48951 || |||||||| | |||| ||||| ||| || || ||| ||| | Sbjct 400 CAGCGCATTCACGCCGTTCACCGTGGTGTAGGCGGTGTCCGGTT----TCCCGGCCGGCG 345 Query 48952 CATACAATGCCGTCTGGTGACCCAAATCAA-CAT-TCGACCAGGCACCCTTAAAATCGTA 49009 ||| || || ||||| || |||| | || |||| |||| || | || ||||| Sbjct 344 CATTCAGCGCGGTCTGATGCCCCAGGTTTTTCAGATCGA--AGGCGCCGTAGAAGTCGTA 287 Query 49010 GTTCATTAAAAATATTTTATCTAAATAATTTTGGGCATCGTTGTATTTAACCACGGCAAT 49069 | |||| | || || | | | | | | || || |||||||| ||| | | || Sbjct 286 GCTCATCAGGAAGATGTGAACCATCGAGATCTGCGCGACGTTGTATGCCACCTTGTCGAT 227 Query 49070 TTTGTCGTCGCCTGCGCTAATGGCGCTTGTTAATTCAAAATTACGGCCGGTTTCGCGTTC 49129 ||||| | ||| ||||| |||||| || | ||| | || ||||||||||| || Sbjct 226 CTTGTCCTTGCCGGCGCTGATGGCGGAGGTCAGCTCATACTTGCGGCCGGTTTC-CGCCG 168 Query 49130 A-AGATCGTCGAGCATTTCGCGTAATTCTTTCAAGAGAACAACATAAGTGTGTCCGTCGT 49188 | || | || ||||| | || | |||||||| || | |||||||| | ||||| | Sbjct 167 ACAGCTGATCCAGCATCGCCCGCAGTTCTTTCATCAGCAGCACATAAGTTTCCCCGTCCT 108 Query 49189 GTTGCGAATCGCCCAACAACGGATTCGCCCCTTTGCCGCCCGGAAATTCCCAATCTATGT 49248 | | ||||| ||| || || |||||||||||||| |||||||| || || | Sbjct 107 GAGGGCT---GCCCAGATTCGGGTTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATAT 51 Query 49249 CGACGCCGTCGAAAAATTTCCAAGT 49273 | ||||||||||| || ||||| || Sbjct 50 CCACGCCGTCGAAGAACTTCCAGGT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419482116385855