Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq260 111 3e-19
seq36177 89.7 1e-12
seq5416 89.7 1e-12
seq14780 86.0 1e-11
seq27486 84.2 4e-11
seq891 84.2 4e-11
>seq260
Length=58366
Score = 111 bits (122), Expect = 3e-19
Identities = 293/446 (66%), Gaps = 1/446 (0%)
Strand=Plus/Plus
Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622
|| ||||| |||||| | | |||||||| || ||||| ||| | ||| || | |||
Sbjct 6444 GAACGTTCCATTCCCTGTCTAGTGGATGGTCTAAAGCCTGGTCAGAGGAAGGTCATGTTT 6503
Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682
| || ||||| ||| | || | || || ||||| || ||||||| ||
Sbjct 6504 ACGTGTTTTAAGCGTAACGACAAACGCGAGGTCAAAGTGGCTCAATTGTCTGGTTCCGTG 6563
Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742
|||| || || | ||||||||||| || ||||||| | |||||| | ||
Sbjct 6564 GCCGAGATGTCGGCATACCATCACGGCGAAGTTTCTCTGCAGATGACAATTGTAAACTTG 6623
Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
|| ||| ||||||| || |||||| || || |||||| ||| ||||| || |||
Sbjct 6624 GCTCAGAACTATGTCGGATCTAACAATATTAATTTGCTGGAACCCCGTGGTCAATTCGGT 6683
Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862
||||||| ||||| |||||| |||| ||| | ||||| || |||| | |||||
Sbjct 6684 ACTCGTCTCACCGGTGGCAAGGATTGTGCAAGTGCTCGTTATATTTTCACAATGATGTCG 6743
Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922
|| | || || | | | ||| | |||||| | | | |||| | |||
Sbjct 6744 CCATTAACCCGACTCATCTATCATCCGTTGGATGATCCTTTGTTGCAATATCAAGTGGAT 6803
Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982
|||||| ||||| || | |||||| | || ||||||| | | | || |||
Sbjct 6804 GATGGTCAGAAAATTGAACCTGTATGGTATATTCCGATTATTCCGATGGTTTTGGTGAAT 6863
Query 218983 GGTGCCAATGGTATCGGGACAGGGTT 219008
|| ||| | |||||||| || |||||
Sbjct 6864 GGAGCCGAAGGTATCGGTAC-GGGTT 6888
>seq36177
Length=792
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 239 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 180
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 179 CCCACGTTGGGC 168
>seq5416
Length=18944
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 5084 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 5025
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 5024 CCCCGCAAGGGA 5013
>seq14780
Length=3469
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||| | ||||||||||||| |||||||||||
Sbjct 3333 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGATTCCTAATCCAAAGGTCGCGGGTTCGAC 3274
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 3273 CCCCGCAAGGGA 3262
>seq27486
Length=4665
Score = 84.2 bits (92), Expect = 4e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116
|| ||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2595 CTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAGTCCCG 2536
Query 142117 C 142117
|
Sbjct 2535 C 2535
>seq891
Length=10353
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|||||| || ||||||| ||| ||||||||||| ||||||||||||||| | |||||||
Sbjct 2664 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGATTTCTAATCCAAAGGTCGTGGGTTCG 2605
Query 142110 ACCCCCGCCAGAGA 142123
| |||||| || ||
Sbjct 2604 ATCCCCGCAAGGGA 2591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027203798034347
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |