Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq260 111 3e-19 seq36177 89.7 1e-12 seq5416 89.7 1e-12 seq14780 86.0 1e-11 seq27486 84.2 4e-11 seq891 84.2 4e-11 >seq260 Length=58366 Score = 111 bits (122), Expect = 3e-19 Identities = 293/446 (66%), Gaps = 1/446 (0%) Strand=Plus/Plus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || ||||| |||||| | | |||||||| || ||||| ||| | ||| || | ||| Sbjct 6444 GAACGTTCCATTCCCTGTCTAGTGGATGGTCTAAAGCCTGGTCAGAGGAAGGTCATGTTT 6503 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 | || ||||| ||| | || | || || ||||| || ||||||| || Sbjct 6504 ACGTGTTTTAAGCGTAACGACAAACGCGAGGTCAAAGTGGCTCAATTGTCTGGTTCCGTG 6563 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742 |||| || || | ||||||||||| || ||||||| | |||||| | || Sbjct 6564 GCCGAGATGTCGGCATACCATCACGGCGAAGTTTCTCTGCAGATGACAATTGTAAACTTG 6623 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| ||||||| || |||||| || || |||||| ||| ||||| || ||| Sbjct 6624 GCTCAGAACTATGTCGGATCTAACAATATTAATTTGCTGGAACCCCGTGGTCAATTCGGT 6683 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862 ||||||| ||||| |||||| |||| ||| | ||||| || |||| | ||||| Sbjct 6684 ACTCGTCTCACCGGTGGCAAGGATTGTGCAAGTGCTCGTTATATTTTCACAATGATGTCG 6743 Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 || | || || | | | ||| | |||||| | | | |||| | ||| Sbjct 6744 CCATTAACCCGACTCATCTATCATCCGTTGGATGATCCTTTGTTGCAATATCAAGTGGAT 6803 Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982 |||||| ||||| || | |||||| | || ||||||| | | | || ||| Sbjct 6804 GATGGTCAGAAAATTGAACCTGTATGGTATATTCCGATTATTCCGATGGTTTTGGTGAAT 6863 Query 218983 GGTGCCAATGGTATCGGGACAGGGTT 219008 || ||| | |||||||| || ||||| Sbjct 6864 GGAGCCGAAGGTATCGGTAC-GGGTT 6888 >seq36177 Length=792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 239 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 180 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 179 CCCACGTTGGGC 168 >seq5416 Length=18944 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 5084 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 5025 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 5024 CCCCGCAAGGGA 5013 >seq14780 Length=3469 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||| | ||||||||||||| ||||||||||| Sbjct 3333 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGATTCCTAATCCAAAGGTCGCGGGTTCGAC 3274 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 3273 CCCCGCAAGGGA 3262 >seq27486 Length=4665 Score = 84.2 bits (92), Expect = 4e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| Sbjct 2595 CTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAGTCCCG 2536 Query 142117 C 142117 | Sbjct 2535 C 2535 >seq891 Length=10353 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| || ||||||| ||| ||||||||||| ||||||||||||||| | ||||||| Sbjct 2664 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGATTTCTAATCCAAAGGTCGTGGGTTCG 2605 Query 142110 ACCCCCGCCAGAGA 142123 | |||||| || || Sbjct 2604 ATCCCCGCAAGGGA 2591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027203798034347