Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq7704 161 2e-34
seq2274 159 6e-34
seq355 125 1e-23
seq3773 107 4e-18
>seq7704
Length=29863
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | |||||||| | || |||||||| || ||||| |||||||||
Sbjct 18576 CCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAG 18517
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || ||||| || || || || | | || || || || |||
Sbjct 18516 AGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18457
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| |||||||| || ||||| |||||||| || | | ||| ||
Sbjct 18456 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 18397
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || ||||||||||| || ||||| ||||||||
Sbjct 18396 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350
>seq2274
Length=37031
Score = 159 bits (176), Expect = 6e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || |||||||| || || ||
Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || || || || |||
Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| |||||||| ||| ||||| || | || || ||
Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||||||||||||| || || || | |||||||||||| ||||||||| ||
Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATTTTG 30155
>seq355
Length=9390
Score = 125 bits (138), Expect = 1e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || || || || || | ||||| || | |||||| |||||||| |||
Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || || || || || || || ||||||||||| || || ||||| || |||
Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||| | | ||| |||||||| |||||||| || || || | || || || ||
Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211
Query 68454 ATCTGCATT 68462
|||||||||
Sbjct 9210 ATCTGCATT 9202
>seq3773
Length=92101
Score = 107 bits (118), Expect = 4e-18
Identities = 199/288 (69%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 268211 CCAGTTGCAATCACAAAGTCCTCTGG-CTCAGGAGACTGGAGCATTTTCCACATTGCTTC 268269
|| |||||||| ||| |||| |||| ||| | || | ||| ||||||| || ||
Sbjct 53452 CCGGTTGCAATAACATAGTCAGCTGGACTCTCCCGT-TGCAACATCATCCACATGGCCTC 53394
Query 268270 GACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCA 268329
|||||||| | ||||| |||||||||||||||| ||||| || ||||| | | |
Sbjct 53393 CACATAGTCGCTGGCATGTCCCCAATCGCGCTTTGAGTCCAAATTGCCGAGCTCAAAGTA 53334
Query 268330 TTTC---TGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAA 268386
|| | || || | || | || | | || || || || || ||||| ||
Sbjct 53333 TTCCATTTGATTCAGTAATATCTTG---GCCACAGATCGTGTTATCTTGCGTGTCACAAA 53277
Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCC 268446
| ||||| || | || ||||||||||||||||| || |||||||| ||||||||| |
Sbjct 53276 GTTTTCGCCTCGCCGTGGACTCTCGTGGTTGAAGAGTATCCCGTTGCAGGCGAACATGTC 53217
Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGC 268494
|| || || || || || | ||| ||||| | | ||||||| ||
Sbjct 53216 GTAGGCTTCCCGATAATTGATGACAATCCAGAAACCGTACATCTTGGC 53169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921068654701240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |