Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq260 129 7e-25 seq19922 104 3e-17 >seq260 Length=58366 Score = 129 bits (142), Expect = 7e-25 Identities = 289/426 (68%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || || |||||||||| || ||||| | |||||| |||| | || ||||| Sbjct 6888 AACCCGTACCGATACCTTCGGCTCCATTCACCAAAACCATCGGAATAATCGGAATATACC 6829 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | |||||||| | |||||||| | ||| | | || || || ||| || Sbjct 6828 ATACAGGTTCAATTTTCTGACCATCATCCACTTGATATTGCAACAAAGGATCATCCAACG 6769 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAGTT--TTGTGAAGATGTACCTCGT--TTGA 171901 ||| | |||| || | | ||| || | ||||||| || || | | ||| Sbjct 6768 GATGATAGATGAGTCGGG--TTAATGGCGACATCATTGTGAAAATATAACGAGCACTTGC 6711 Query 171902 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 || ||| |||||||| ||||||| || || |||||||||| ||||| || | ||| Sbjct 6710 -ACA-ATCCTTGCCACCGGTGAGACGAGTACCGAATTGACCACGGGGTTCCAGCAAATTA 6653 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGAC 172020 |||||||| || || | |||| | ||||| || ||||| || ||| || || || || Sbjct 6652 ATATTGTTAGATCCGACATAGTTCTGAGCCAAGTTTACAATTGTCATCTGC-AGAGAAAC 6594 Query 172021 TTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCAT 172080 ||| ||||||||||| |||||| | || || || | | | ||| || ||||| || | Sbjct 6593 TTCGCCGTGATGGTATGCCGACATCTCGGCCACGGAACCAGACAATTGAGCCACTTTGAC 6534 Query 172081 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAG 172140 ||| ||| ||| | || |||| | |||||||||| ||||| |||||| || Sbjct 6533 CTCGCGTTTGTCGTTACGCTTAAAACACGTAAACATGACCTTCCTCTGACCAGGCTTTAG 6474 Query 172141 GCCGTC 172146 || || Sbjct 6473 ACCATC 6468 >seq19922 Length=1369 Score = 104 bits (114), Expect = 3e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 ||| ||||| || || || |||||||| |||||||| || |||||||||||| || Sbjct 1218 CACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAG 1159 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAA-TGAACCCGAGAAG 126160 || ||||| ||||| |||||||||| |||||| |||| | ||||| || || |||| Sbjct 1158 ACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTG--CCGCTGAAG 1101 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| || || ||| || || |||| || ||||| ||||| Sbjct 1100 AAGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAG 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596994687556360