Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq6802 86.0 5e-12 seq2746 84.2 2e-11 seq17788 82.4 6e-11 >seq6802 Length=4120 Score = 86.0 bits (94), Expect = 5e-12 Identities = 129/183 (70%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 108790 ACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGACAAGAACATT 108849 || |||||||| || || |||||||||| |||| | || ||||||||| ||| Sbjct 378 ACTTGGCTGGTGAACAGCGCAGCGCACATGTTCGGCAATAAACCATTCGACAAGTCCATC 319 Query 108850 TTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTAC 108909 || || |||| || || | | || | |||||||||||||| ||||| Sbjct 318 AAGCCTTCGGAGAACATTCCTGTTGCATTGATCGCCTTTGGCGAGGGATGGCATAACTAT 259 Query 108910 CACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGACT---TTAATTTC 108966 ||||| |||||||||| |||||||| ||||||||| | || ||| | | |||| ||| Sbjct 258 CACCATGTGTTCCCCTGGGACTACAAAGCCGCCGAGCTCGGCAACTATTCGCTTAACTTC 199 Query 108967 ACC 108969 ||| Sbjct 198 ACC 196 >seq2746 Length=14337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||||||||||||||| |||||||||||||| ||||||| |||||||| || || |||| Sbjct 5786 TCGGCGAGGGATGGCATAACTACCACCACGTCTTCCCCTGGGACTACAAAGCAGCTGAGT 5845 Query 108947 TGGG 108950 |||| Sbjct 5846 TGGG 5849 >seq17788 Length=4855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 108871 GTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGAC 108930 ||||| | | | ||| |||||||||||||||| ||||| ||||| |||||||||| || Sbjct 744 GTGGCAGTGCTCGCTTTCGGCGAGGGATGGCATAACTATCACCATGTGTTCCCCTGGGAT 685 Query 108931 TACAAGGCCGCCGAGTTGGGGAA 108953 |||||| |||| ||||| || || Sbjct 684 TACAAGACCGCTGAGTTCGGCAA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381549151170648