Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2274 113 4e-20 seq7704 107 2e-18 seq355 84.2 2e-11 >seq2274 Length=37031 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| || Sbjct 30385 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 30326 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| ||||||||||| ||||| Sbjct 30325 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 30266 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | || | ||| || | ||| || Sbjct 30265 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCACC 30206 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || || ||||||||||| Sbjct 30205 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 >seq7704 Length=29863 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | |||||| || | || |||||||| ||||| ||||||||| Sbjct 18579 GCACCACCACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCG 18520 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || | || || ||||| ||||||| ||||||||||| ||| Sbjct 18519 GAGAGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 18460 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | || |||| | ||||| ||| |||| || Sbjct 18459 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTC 18401 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || | || || || || || ||||| || || |||||||| Sbjct 18400 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq355 Length=9390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| ||||| ||| | || | ||||||||||| || || || |||||||| Sbjct 9358 ATCCTCCAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCTGGGGGGATACCCTCCTT 9299 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| ||| | | || | |||||| | | || ||||| | || | Sbjct 9298 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGAAGGTTCAACTTCCAAAGTGAT 9239 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| ||||| ||||| |||||||| Sbjct 9238 GGTCTTGCCAGTCAATGTTTTCACAAAGATCTGCAT 9203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475215101288080