Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2144 161 9e-35 seq42801 132 4e-26 >seq2144 Length=13752 Score = 161 bits (178), Expect = 9e-35 Identities = 1168/1863 (63%), Gaps = 62/1863 (3%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAA--AACGGATATTTGaaaaaaaTCGAGGAAA 122898 || || |||||||||| ||| || || || | || |||||| ||||||| | | | Sbjct 3097 TATAATTATTTTGGATTCAAGACTTTGGAGCGATCG--TATTTGTTAAAAATCAATGGCA 3154 Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958 | || || |||||| || || ||||| ||||| || || || || | || ||| | Sbjct 3155 AAGTTGCTGAACGTCCACAGCACATGCTGATGCGAGTTGCCATCGGTATACATGGAGATG 3214 Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018 | || || ||| || |||||| ||||| | || || || ||||| || || Sbjct 3215 ATATTGATTCCGCACTGGAGACTTACAATTTGCTTTCGGAACGCTTCTTCACACATGCCT 3274 Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078 || || | ||||| || | || | |||||| ||||||| || ||| | |||| Sbjct 3275 CACCAACACTTTTCGCAGCTGCAACCACACGCCCTCAGCTGTCTTCATGCTTTCTCCTCA 3334 Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138 || || ||| ||| || |||| | || || || | || ||| |||| | Sbjct 3335 CCATGGTATCTGACTCAATCGAGGGAATCTTTAAATCTGTGGAGCAGTGTGCGATGATCT 3394 Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC- 123197 | || | | || || || || |||| ||||| | | | |||| || | | | Sbjct 3395 CAAAGTCAGCAGGTGGTATTGGTCTGAATGTGCATTGCATTCG-GGCCAAGGGAACTTCG 3453 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCG--GGCTCGAATCC-ATGCTGCGAGTTTACAAT 123254 || || ||||| | || | | ||| |||| | ||| |||||| |||| | || Sbjct 3454 ATTAGTGGCACCAATGGTA---CATCCAATGGCTTGGTTCCTATGCTGAGAGTATTTAAC 3510 Query 123255 AACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | || | || || ||||| ||||||| | || || | || || || Sbjct 3511 AATGTGGCACGTTATGTGGATCAGGGTGGCGGCAAAAGACCTGGAGCTTTTGCCATTTAC 3570 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TTAAAACGCAACATGGGGGC 123370 || || || ||||| ||||| | || || || || |||| | | |||| || Sbjct 3571 CTCGAGCCTTGGCATTCCGATGTCTTTGAGTTCTTGGATCTTAAGAAG-AACACTGGCAA 3629 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 || ||| | || || ||| |||| || || | ||| |||| |||||||||||| Sbjct 3630 AGAGGAACATCGTGCTCGGGATCTGTTCTATGCCCTGTGGATACCAGATTTGTTTATGAA 3689 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 ||||| ||| | | | | ||||| || ||||| || | |||||| || | Sbjct 3690 GCGCGTGGAAGCCAATGAGGATTGGTCACTGATGTGCCCGCACAAGTGTCCAGGACTCGC 3749 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG-----C 123545 || |||| || || ||||||| ||| | || | |||||||| || || | Sbjct 3750 TGATGTTTGGGGTGATAAGTTTGAGGAGCTCTATACAAAATACGAGAAGGAGGGTCGAGC 3809 Query 123546 AAACAG-GTTAGTCAGGTTCCGGCACGT-GATTTGTTCAAATTTATTATCGAAACACAAG 123603 ||| | |||| ||| || | | | | |||| || || || |||||| Sbjct 3810 AAATCGTGTTATCAAGGCTCAATCCCTTTGGTTTGCC-------ATCATTGAGTCACAAG 3862 Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 | || || || || ||||||||||||| ||| || | || ||| | || | ||| || Sbjct 3863 TGGAGACTGGCACACCGTACATGCTCTTCAAGGATTCGTGTAACCGCAAGAGCAACCAAC 3922 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 || |||| ||||| ||||| ||||| | ||| | |||||| | || || | Sbjct 3923 AAAATGTGGGCACAATTAAATGCAGTAACTTGTGCACTGAAATTGTTGAGTATTCTGCAC 3982 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT-----CGA 123778 | ||| | | || || || |||||||| ||||| | ||| | ||| || Sbjct 3983 CAGATGAGATTGCTGTTTGCAATTTGGCATCGATAGCTCTCAATATGTTCGTAACACCGG 4042 Query 123779 AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTT 123838 | | | || | | ||| || ||||||| | || || | ||| || || || Sbjct 4043 AGAAGACG-TACGACTTTGTGAA-GCTCAAAGAGGTCACCAAGATTGTTACCAAAAACTT 4100 Query 123839 GAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAA 123898 |||||| || |||||| | |||| || ||| || || || || || || | Sbjct 4101 GAACAAGATCATCGATATCAATTACTACCCTCTGCCCGAGGCTAAGAAATCCAACTTAAG 4160 Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTT---TGTAATGCTGCG 123955 ||| | || | ||| | || ||||||| | || || || || | |||||| | Sbjct 4161 ACATCGTCCAATTGGAATTGGAGTTCAAGGACTTGCAGATGCTTTGATTTTAATGCGGT- 4219 Query 123956 CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTA 124015 || || || || || || | || | || ||| || ||| |||||| ||||| Sbjct 4220 -ATCCC-TATGAGAGTGATAAGGCGTGTCTTCTGAATCAACAGATATTCGAAACCATTTA 4277 Query 124016 TTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTA 124075 || ||||| ||||| || ||||| || || || | | | ||| |||| || | || Sbjct 4278 CTATGGCGCATTGGAAGCCAGCTGTGAGCTGGCTGAGAAAGATGGCACGTATGAGACCTA 4337 Query 124076 CGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGAC 124135 | ||| || || | ||| |||||| | ||||| || ||||||||| ||| || Sbjct 4338 TGAGGGAAGTCCAGTTAGCAAGGGTATTCTCCAGTATGATATGTGGAATAAGGTACCCAC 4397 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGC----ATATCGACGCACGGTTTGCGTA 124191 |||| | ||||||||| ||| || ||| | ||| | |||||| |||||| Sbjct 4398 AAATCTCTGGGACTGG-GCGA---AACTCAAGGAGAAGATAAGCAAGCACGGAGTGCGTA 4453 Query 124192 ACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACG 124251 | || ||| | | || ||||| |||||| | || || || || | || || || | Sbjct 4454 ATTCTCTGCTTATCGCACCAATGCCAACGGCATCGACAGCCCAGATAATGGGTAATAATG 4513 Query 124252 AATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTC 124311 |||| ||||| || | |||| || | ||| |||||||| | | || || |||| Sbjct 4514 AATCTTTCGAACCCTACACTTCAAACATCTACACAAGACGAGTGCTGTCTGGAGAGTTTC 4573 Query 124312 AAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACA 124371 | || | |||||||||||| || || | | | | |||| ||||| | | Sbjct 4574 AGGTTGTGAATCATCATTTGTTGCGTGATCTAACCGAACTGGACTTGTGGGATGATGATA 4633 Query 124372 TGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAAC 124431 || || |||| || || ||||| | | || ||||| ||||| || Sbjct 4634 TGAAAAATCAAATAATCGCAAGTCGTGGCTCCATACAAAACATCGAAAACATTCCTCAAA 4693 Query 124432 ACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAA 124487 | || |||| || || ||||| |||||||| | ||| | || ||| || Sbjct 4694 ATGTGCGTGAACTATATAAGACCGTTTGGGAAATATCCGTAAAGTCCAC----AATCAAA 4749 Query 124488 ATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCG 124547 ||||| | || || || || | || |||||||||||||| ||||| | |||||| Sbjct 4750 ATGGCAGCAGATCGTGGAGCTTTCATTGATCAAAGTCAATCCTTTAATATTCATGTAGCT 4809 Query 124548 GAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAA 124606 ||||| | || | |||| ||| || | | | |||| ||| || || || Sbjct 4810 GAACCAAATTATGGTAAGCTGACATCCATTCATTTCTTCTCCTGGA-AAGCGGGTCTTAA 4868 Query 124607 AACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGA 124666 ||| || |||||||| | | || || ||||| ||| |||| ||||| ||||| || || Sbjct 4869 AACAGGAATGTATTATCTTCGCACTAAGCCGGCAGCCAATGCTATTCAGTTTACTGTAGA 4928 Query 124667 CAA 124669 || Sbjct 4929 TAA 4931 >seq42801 Length=1186 Score = 132 bits (146), Expect = 4e-26 Identities = 364/550 (66%), Gaps = 11/550 (2%) Strand=Plus/Minus Query 50156 GTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAAA 50215 ||| || || | ||||| ||||| |||||| |||| ||||||||| | || || || Sbjct 556 GTAGTCCACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTGCCGGTGAA 497 Query 50216 CGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGCC 50275 |||| ||| || | ||||||| |||| ||| |||||| | ||| |||||||| ||| Sbjct 496 CGGAATGTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATGGCGGTGCC 437 Query 50276 TACGATTATTTTGCTCGGCTGCACGTTTTGATCGAGAAGAACGTTTACCGCAAAATCGGT 50335 |||| || |||| ||||| ||| || | || || | || || | | || Sbjct 436 GACGACGATCTTGCCCGGCTTGACGCCCTGCGCCAGCAGCGCATTCACGCCGTTCACCGT 377 Query 50336 CGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAATC 50395 ||||| ||| | |||| || ||||||| || | |||||||| |||| | Sbjct 376 GGTGTAGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGCCCCAGGTT 317 Query 50396 GAC--GGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAA 50453 | | || | ||||| | || ||||| ||||| | || || | | | | | Sbjct 316 TTTCAGATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAACCATCGAG 259 Query 50454 TTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTC 50513 | || ||| || ||| || | |||| || || | || ||||| | |||| Sbjct 258 ATCTGCGCGACGTTGTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGATGGCGGAG 199 Query 50514 GTCAATTCGAATTCGCGGCCGGTGACGCGTTGA-AGATCGTCCAGCATGTCGCGCAGATC 50572 |||| || | | ||||||||| | || || || | |||||||| | ||||| || Sbjct 198 GTCAGCTCATACTTGCGGCCGGTTTC-CGCCGACAGCTGATCCAGCATCGCCCGCAGTTC 140 Query 50573 GCGAAGCAGCACAACGTACGTGAGTCCGTCTTTGTGAGGATCGCCGAC-TGCGGGATTGG 50631 | ||||| || || || ||||| | |||| ||| | | |||| |||| Sbjct 139 TTTCATCAGCAGCACATAAGTTTCCCCGTCCT---GAGGGCTGCCCAGATTCGGG-TTGG 84 Query 50632 CGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAGTCA 50691 |||| |||||||| || || ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 83 CGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCCAGGTCT 24 Query 50692 GCAGAAACTC 50701 |||| ||||| Sbjct 23 GCAGGAACTC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451731619527320