Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq260 138 1e-27 seq19922 113 6e-20 >seq260 Length=58366 Score = 138 bits (152), Expect = 1e-27 Identities = 291/426 (68%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || || |||||||||| || ||||| | |||||| |||| | || ||||| Sbjct 6888 AACCCGTACCGATACCTTCGGCTCCATTCACCAAAACCATCGGAATAATCGGAATATACC 6829 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||| | |||||||| | ||| | | || || |||||| || Sbjct 6828 ATACAGGTTCAATTTTCTGACCATCATCCACTTGATATTGCAACAAAGGATCATCCAACG 6769 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTT--TTGTGAAGATGTACCTCGT--TTGA 175921 ||| | |||| || | | ||| || | ||||||| || || | | ||| Sbjct 6768 GATGATAGATGAGTCGGG--TTAATGGCGACATCATTGTGAAAATATAACGAGCACTTGC 6711 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || ||| |||||||| ||||||| || || |||||||||| || || || | ||| Sbjct 6710 -ACA-ATCCTTGCCACCGGTGAGACGAGTACCGAATTGACCACGGGGTTCCAGCAAATTA 6653 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGAC 176040 |||||||| || || | ||||| | ||||| || ||||| || ||| || || || || Sbjct 6652 ATATTGTTAGATCCGACATAGTTCTGAGCCAAGTTTACAATTGTCATCTGC-AGAGAAAC 6594 Query 176041 TTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCAT 176100 ||| ||||||||||| |||||| | || ||||| | | | ||| || ||||| || | Sbjct 6593 TTCGCCGTGATGGTATGCCGACATCTCGGCCACGGAACCAGACAATTGAGCCACTTTGAC 6534 Query 176101 CTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAG 176160 ||| ||| ||| | || |||| | |||||||||| ||||| |||||| || Sbjct 6533 CTCGCGTTTGTCGTTACGCTTAAAACACGTAAACATGACCTTCCTCTGACCAGGCTTTAG 6474 Query 176161 GCCGTC 176166 || || Sbjct 6473 ACCATC 6468 >seq19922 Length=1369 Score = 113 bits (124), Expect = 6e-20 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||||||||| || || || |||||||| |||||||| || |||||||||||| || Sbjct 1218 CACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAG 1159 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGA 127634 ||| ||||| ||||| |||||||||| |||||| |||| | ||||| ||| ||||| Sbjct 1158 ACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAA-CTGCCGCTGAAGA 1100 Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||| || || |||| | |||||| ||||| Sbjct 1099 AGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAG 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613138581867720