Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2144 114 2e-20 seq19922 100 5e-16 >seq2144 Length=13752 Score = 114 bits (126), Expect = 2e-20 Identities = 348/530 (66%), Gaps = 36/530 (7%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| || || || ||||||||||||| ||| || | ||||||| || ||||| Sbjct 3972 CTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCT 3913 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 |||||||||||| || |||||| | | |||| |||| | || |||||| || || Sbjct 3912 CTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGTGA--- 3856 Query 205003 CAGAATGTGGGT---CCACA---ATTCGCGAGCCTC-----CAC---TTGCTTCACGTAC 205048 | |||| || ||| | ||| |||||| ||| ||||| || | Sbjct 3855 CTCAATGATGGCAAACCAAAGGGATT---GAGCCTTGATAACACGATTTGCTCGAC---C 3802 Query 205049 ATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATC 205108 ||| | |||||||||||| || ||| || |||| | | ||| | || || Sbjct 3801 CTCCTT-----CTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCG 3747 Query 205109 AGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCC 205168 || |||||||| || | || |||||||| ||||| || || | ||| ||| | || | Sbjct 3746 AGTCCTGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTC 3687 Query 205169 ATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCT 205228 ||||||| || ||||||||| | || |||||||| || || | | | | || | Sbjct 3686 ATAAACAAATCTGGTATCCACAGGGCATAGAACAGATCCCGAGCACGATGTTCCTCTTTG 3627 Query 205229 CCAAGGTTCTTTTTCAAGTCCAGCCAAG-CCGCAATG---TCGGCGTGCCACGGCTCTAA 205284 ||| |||||| || ||| | ||||| | ||| | |||| ||||| ||||| | Sbjct 3626 CCAGTGTTCTTCTT-AAG---ATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAG 3571 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | ||| | || || || || ||| |||||||| ||||| || | || Sbjct 3570 GTAAATGGCAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATT 3511 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||| || |||| |||||| || |||| || |||| || || || |||| Sbjct 3510 GTTAAATACTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGC 3461 >seq19922 Length=1369 Score = 100 bits (110), Expect = 5e-16 Identities = 347/532 (65%), Gaps = 22/532 (4%) Strand=Plus/Minus Query 159922 GCAC-GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 |||| ||||| ||||| || ||||||||||| || ||||| | ||| || || | | | | Sbjct 1219 GCACAGCAAAATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAA 1160 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAA 160040 | || ||||| | |||||| || ||||| || || | ||||||| ||||| || | Sbjct 1159 GACCGGGCATAAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGA 1100 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGT 160097 |||| || || || || ||||| || | || | ||| ||||| | || || | | Sbjct 1099 AGATGCCTTCGACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCGAG- 1041 Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCAC----GGCATGCGCTCG 160153 | |||| ||||| || ||| || || | ||| ||||| || Sbjct 1040 --GAGATCCAAGACAGAGCCCAATCTGCC----TTACGCTTCACAGCGGGCATCGTTTCA 987 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 | ||| || || | ||| ||| | | |||| || ||| | || ||| Sbjct 986 ATGGCATTGAAGAGGTAGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACG 927 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 ||||||||| | ||| ||||| || ||||| ||||| ||| || || | ||| Sbjct 926 CTGTACATTTCCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCC 867 Query 160274 TC-CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 || ||| ||||| ||||| |||| | | | ||||| ||||||| | ||||| Sbjct 866 TCTGTGAT-TTGCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTC 808 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC-GTCTTTGTTGAGTC 160391 | ||| |||||||||||||| || || || ||||| || | ||| | | |||| |||| Sbjct 807 AGAGGCGGCAAAGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTT-AGTC 749 Query 160392 TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 |||||| |||| ||| | || | ||| || || ||| || |||| Sbjct 748 ---GAGCCCAGTCGGTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCA 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794677440937520