Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19922 284 1e-71 seq42801 228 8e-55 seq2274 113 5e-20 seq355 96.9 3e-15 >seq19922 Length=1369 Score = 284 bits (314), Expect = 1e-71 Identities = 410/574 (71%), Gaps = 6/574 (1%) Strand=Plus/Minus Query 132862 CTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGTCGCAATGCAAGCCCTC 132920 || || || || ||||| |||| |||||| ||||| |||||| |||||||| | ||||| Sbjct 1250 CTGGGACGCTGTACCAAGTGCTGGAACAT-AAGCACAGCAAAATCGCAATGAAGTCCCTC 1192 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | ||| || || || || ||| || | |||||||| || || || || || || Sbjct 1191 GTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCGGGCATAAGACCACGCTTCTTCAG 1132 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || | || |||||||| ||||||| ||| ||||| || || || || | Sbjct 1131 CCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATGCCTTCGACAGCAGCAAAGGCAAT 1072 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | ||||||||| || | || | || || |||||| ||| ||||| || ||||| Sbjct 1071 GATGCGCTCGCCAAAGTTTGCCGCCTTCGAGGAGATCCAAGACAGAGCCCAATCTGCCTT 1012 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 || || ||||||||||| ||||| || || | | ||| | || | ||| Sbjct 1011 ACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAGAG--GTAGTCGCGCTGATGCGGA 954 Query 133161 ACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218 | | | ||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct 953 TCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCCGAGTGGACATTCTCCATGGCA 894 Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || ||||| |||||||| || ||||| | |||||||| || ||| |||||| Sbjct 893 ATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGGCTGAAGCGCTCG 834 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 || ||||| || || || |||||||| |||||| || || |||| || || ||| Sbjct 833 ACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAGAAAGCCAAAACATGTGAAATG 774 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || ||||| ||||| | | || |||||||| | |||||||||| || ||||| Sbjct 773 AAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTCATGTCCTTGGATAGATCCACT 714 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 ||||| |||||||| || || || ||||| |||| Sbjct 713 TCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 >seq42801 Length=1186 Score = 228 bits (252), Expect = 8e-55 Identities = 519/783 (66%), Gaps = 15/783 (2%) Strand=Plus/Minus Query 61512 CAGACCGGCGTGCATGGCGTTCAGCAGGTCGCCGTTGTCGGCGTCGATCTCCCACGCGAA 61571 ||| | ||||| |||| ||| || | ||||||||||| |||||||||||||| | ||| Sbjct 787 CAGGCTGGCGTTCATGCTGTTGAGAATATCGCCGTTGTCCGCGTCGATCTCCCAGGAGAA 728 Query 61572 CAGACCGCCCAGCCCGAGCTCGCGCGCGTACTTTCCCTTGTCGAGTATCGAATCTGCGTT 61631 || ||||||||| || | ||||||| || ||| | | ||| || | Sbjct 727 TAGGCCGCCCAGCTGCTTATCCAACACGTACTTGCCTTTGGCCTGCCCCGAGCGGGCATC 668 Query 61632 GTCGAAGGACACCAGCGCGCCCGCCGGCTCGTCGAAGGCGTACGCGCCTTTGGCCGTCGA 61691 ||| |||| | ||| |||| | | | ||| |||| | ||| ||||| | Sbjct 667 GTCAAAGGTGATCAGATCGCCGGTGGTAGGTTTGAACACGTAAGGCGCTTCCGCCGTGGC 608 Query 61692 GTCGTACGCGTA-TGCGTATCGGCCGCCGTCGA--TGGCTAAGCGCAACTCGCGGTAGTC 61748 |||||| | ||| ||| ||| |||| || ||||| ||| | || ||||||||| Sbjct 607 GTCGTAGGTGTACTGCCACTCG-CCGCTCATGAACTGGCTG-GCG-ATCTGGCGGTAGTC 551 Query 61749 CACCACGCCGTCCTCCCACGTGCCCGGCACNNNNNNNNNNNNNNNNNNNNNGAACGGGTT 61808 ||| | ||||| |||||| ||||| || |||||| | Sbjct 550 CACGATGCCGTTCTCCCAGGTGCCTTTGACCGGCCCGGTGGCGGTGCCGGTGAACGGAAT 491 Query 61809 GCCGTCCGCGTAGCCGGTCACGCCGGTCCAGCCGCGTCCGTACATGGCCACGCCGAGCAC 61868 | || | ||||||| |||| |||||||| ||||| || |||||||| ||||| || Sbjct 490 GTTGTTCTGGTAGCCGTTCACCCCGGTCCAACCGCGGCCATACATGGCGGTGCCGACGAC 431 Query 61869 GATCTTGTC-GGCGGGCACGCCCTGCGCTAACAGCTGACGCACCGCGTTGTCGGCGGTGT 61927 ||||||| | ||| | ||||||||||| | |||| | ||| |||| | | ||||| Sbjct 430 GATCTTGCCCGGCTTG-ACGCCCTGCGCCAGCAGCGCATTCACGCCGTTCACCGTGGTGT 372 Query 61928 AGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCCCAGCTCGGT-- 61985 ||| ||| || || | |||||| | |||||||||||| || ||||| | | Sbjct 371 AGGCGGTGTCCGGTTTCCCGGCCGGCGCATTCAGCGCGGTCTGATGCCCCAGGTTTTTCA 312 Query 61986 GGTGGACCACGCGCCCTTAAAGTCGTAGCTCATCaaaaaaaTGCGGTCGAGCGAGCGGTG 62045 | | || | ||||| | |||||||||||||||| || ||| | | | |||| || Sbjct 311 GATCGA--AGGCGCCGTAGAAGTCGTAGCTCATCAGGAAGATGTGAACCATCGAGATCTG 254 Query 62046 CGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGCGCTGGTCAG 62105 |||| ||| |||| | |||||||||| | |||||||| ||||||| |||||| Sbjct 253 CGCGACGTTGTATGCCACCTTGTCGATCTTGTCCTTGCCGGCGCTGATGGCGGAGGTCAG 194 Query 62106 CTCGTACGTCCTGTTGGTCTCGGTCTGCAGCTCGTCGAGCATGAGCNNNNNNNNNNNNNN 62165 ||| ||| | | | ||| || | | ||||| || ||||| | Sbjct 193 CTCATACTTGCGGCCGGTTTCCGCCGACAGCTGATCCAGCATCGCCCGCAGTTCTTTCAT 134 Query 62166 NNNNNNCGCGTACGTTTCGCGGTCGCGCTCCGCGTCGCCCAGCAGCGGGTTGGCGCCCTT 62225 | | || ||||| | ||| || | | |||||| |||||||||||| || Sbjct 133 CAGCAGCACATAAGTTTCCCCGTC---CTGAGGGCTGCCCAGATTCGGGTTGGCGCCTTT 77 Query 62226 GCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTCCACGTCTGCAGAAA 62285 ||||||||| || |||||||| | |||| ||||||||| | |||||| |||||||| || Sbjct 76 GCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCCAGGTCTGCAGGAA 17 Query 62286 CTC 62288 ||| Sbjct 16 CTC 14 >seq2274 Length=37031 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || ||||| ||||||||| | || || ||| | Sbjct 30156 AAAATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCA 30215 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| ||||| ||||| | || Sbjct 30216 TCTGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCAGAT 30275 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||| || |||||| Sbjct 30276 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTAC 30335 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || || |||||||| ||| || | || || Sbjct 30336 AACATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 30385 >seq355 Length=9390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| | || ||||| |||||||| | || || || | Sbjct 9200 AAAATGCAGATCTTTGTGAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCT 9259 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || | ||||||| ||||| ||||| || ||| | || Sbjct 9260 TCCGACACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGTATCCCCCCAGAT 9319 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||||| ||| || || |||||||| || | || || || |||||| Sbjct 9320 CAGCAGCGTCTCATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACTCTGTCGGACTAC 9379 Query 38421 AACATCCAAAA 38431 |||||||| || Sbjct 9380 AACATCCAGAA 9390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499872277425280