Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7704 125 3e-23 seq18485 87.8 7e-12 seq8229 87.8 7e-12 >seq7704 Length=29863 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || || ||||| || || |||||||| || ||| | || Sbjct 18350 ATGCAGATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 18409 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 18410 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 18469 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || || ||| | |||||||| | ||| | | ||||| || Sbjct 18470 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACTCTCTCCGATTACAAC 18529 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || ||||| | ||||| || Sbjct 18530 ATTCAGAAAGAGTCAACATTGCACTTGGT 18558 >seq18485 Length=2524 Score = 87.8 bits (96), Expect = 7e-12 Identities = 181/263 (69%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT--T 452048 ||||| |||||||| || || |||||||| || |||||||||| |||||| | || | Sbjct 2484 AATCCAGATGAAGCGGTGGCCTATGGTGCCGCCATTCAAGCAGCCATTCTATCCGGAGAT 2425 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 |||| | | | |||| | || | || | || ||||| |||| || || || || Sbjct 2424 CAGAGTA-GTCAGATTAAG-GACGTGCTACTGGTCGATGTTGCACCACTGTCGCTGGGCA 2367 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTA 452168 | || || ||||| ||| ||||||| || || ||| | || | | || || || | Sbjct 2366 TAGAGACCGCTGGCGGAGTGATGACCAAATTGATTGAGCGCAACAGTCGCATACCCTGCA 2307 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAG-TGATAACCAACCAGGTGTAACTATTCAAGTG 452227 || || | ||||| | || | | | ||||||||| || | ||| || |||| || Sbjct 2306 AACAGTCGAAGACATTCACCAC-GTACGCTGATAACCAGCCCGCTGTGACCGTTCAGGTC 2248 Query 452228 TTTGAAGGAGAACGTGCAATGAC 452250 || || ||||||||||| |||| Sbjct 2247 TTCGAGGGAGAACGTGCCTTGAC 2225 >seq8229 Length=8951 Score = 87.8 bits (96), Expect = 7e-12 Identities = 269/414 (65%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | ||| | || | || || | ||| | || || || || || || Sbjct 6408 GGCAAGCCCAAAATTGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAG 6349 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||||| | || |||||||| || || || || || | || | Sbjct 6348 ATCTCCTCCATGGTGTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACT 6289 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || |||||||| || ||||||||||||||| |||| || || || || Sbjct 6288 GTCACCAATGCTGTCATTACTGTGCCAGCTTATTTCAATGATTCACAGCGTCAGGCTACC 6229 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||||| ||||| ||||| | || || || || || || || || Sbjct 6228 AAGGATGCTGGTACCATTGCCGGTTTGAATGTGTTGCGTATCATCAACGAGCCAACTGCC 6169 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || ||||| || ||| || || | | ||| ||| | || | Sbjct 6168 GCGGCCATTGCTTATGGTCT-GGACAA--GAAGGCTGTTGGAGAGCGTAATGTGTTGATC 6112 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| || || || || ||| ||| | || || ||||| || || | || Sbjct 6111 TTTGATTTGGGCGGCGGTACCTTCGATGTCTCTATTCTGTCGATTGATGACGGCATCTTC 6052 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || | || ||||| || ||| | || ||||| ||| | || ||| Sbjct 6051 GAGGTCAAATCTACGGCCGGTGACACCCATTTGGGTGGTGAGGATTTCGACAAT 5998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974501637153236