Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8229 250 2e-60 seq14110 125 5e-23 seq11225 105 5e-17 seq29510 100 2e-15 seq14510 87.8 1e-11 >seq8229 Length=8951 Score = 250 bits (276), Expect = 2e-60 Identities = 573/858 (67%), Gaps = 6/858 (1%) Strand=Plus/Plus Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 || ||||||| ||| || | ||||| ||| |||||||| || || || | ||| || Sbjct 5834 CCCTCGAACAGAGAGTCGATCTCAATGCTAGCCTGAGTCGACGACGACAGGGTACGCTTT 5893 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTG 517976 ||||| || || || || | || | || | || ||| ||| | ||| ||| Sbjct 5894 GCACGCTCGCAGGCAGTGCGCAGACGACGGAGAGCAC--GCTTGTTGGTGGTCAGATCCT 5951 Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 | || | || | |||||| || | ||| | || || |||||||| || ||||| | Sbjct 5952 TCTTGTGCTTGCGCTTGAACTCCTGTACAAAGTGAGTGACCAGACGATTGTCGAAATCCT 6011 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | || | || | ||||| | | || | ||| | || || |||| | Sbjct 6012 CACCACCCAAATGGGTGTCACCGGCCGTAGATTTGACCTCGAAGATGCCGTCATCAATCG 6071 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 ||| || || ||||| ||| || || |||| |||||| || | ||||| ||| Sbjct 6072 ACAGAATAGAGACATCGAAGGTACCGCCGCCCAAATCAAAGATCAACACATTACGCTCTC 6131 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | || || || |||||||| |||| || || |||||||| || || || || | Sbjct 6132 CAACAGCCTTCTTGTCCAGACCATAAGCAATGGCCGCGGCAGTTGGCTCGTTGATGATAC 6191 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| ||||| | ||| ||||| | || ||||| || || || || | |||||||| | Sbjct 6192 GCAACACATTCAAACCGGCAATGGTACCAGCATCCTTGGTAGCCTGACGCTGTGAATCAT 6251 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | ||||| || || |||||||| || |||| || || || || | || || | Sbjct 6252 TGAAATAAGCTGGCACAGTAATGACAGCATTGGTGACAGTCTTGCCCAGGTACGCCTCGG 6311 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTG 518395 | || | |||||||| | || | ||| || || || | || |||||| | | ||| Sbjct 6312 CGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGAAGGTCTTC 6370 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 |||| | || | || |||| | || || | |||| | | ||| | || Sbjct 6371 TTCTCATCCTTGTACGTAACCTCAATTTTGGGCTTGCCATCAACGCTGACAACCTCGAAA 6430 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||||| |||||||| ||||| ||| |||| || | | |||||| | || Sbjct 6431 GGCCAGTGCTTCATATCGGATTGCACAGCCGAATCATCGAATTTGCGACCAATCAGACGC 6490 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || ||||| || || || | |||||| || || || | || | ||||| ||||| ||| Sbjct 6491 TTAGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGGTTCTTGGCAGCATCACCA 6550 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 |||| | | || || || || || | |||||| ||||| || || |||||||| ||||| Sbjct 6551 ATCAAACGCTCCGTATCCGTGAAGGCAACATACGATGGGGTGGTACGATTACCCTGATCG 6610 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 || ||||| || ||||| || |||| || | ||||| ||||| | || || || Sbjct 6611 TTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACACAGGAGTAGGTGGTACCC 6670 Query 518696 AAATCAATACCAATAGCA 518713 ||||||||||| | |||| Sbjct 6671 AAATCAATACCGACAGCA 6688 >seq14110 Length=7795 Score = 125 bits (138), Expect = 5e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 || || | ||| ||||| |||||||| ||| ||||||| |||| |||||| | |||||| Sbjct 7759 GTTGACTTTTCCTCTCCGAATATTGCAAAACTAATGCATGTTGGTCATTTACGTTCAACT 7700 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 || ||||| || ||||| ||| | | | || | | ||||||||| ||| ||| Sbjct 7699 ATCATTGGCGAGTCTATCTGTCGCCTTCTTGAGTTCCTTCAGCACGATGTTCTTCGCATT 7640 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||||| | ||||||||||| ||||||||||||||| | ||||| Sbjct 7639 AATCATTTAGGTGATTGGGGCACTCAATTCGGTATGCTGATTGC 7596 >seq11225 Length=4956 Score = 105 bits (116), Expect = 5e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 ||||| | || ||||| ||||| |||||| ||||||| |||| |||||| | |||||| Sbjct 4058 GTCGACTTCTCCTCTCCCAATATAGCTAAACAAATGCACGTTGGGCATTTACGTTCAACT 3999 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 || ||||| || || || ||| | | | || | |||||| ||| ||| || Sbjct 3998 ATCATTGGCGAGTCAATCTGTCGTCTTCTTGAGTTTCTCCAACACGACGTTCTTCGAATA 3939 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 |||||| | || |||||||| || |||||||||||| | |||||| || Sbjct 3938 AATCATTTAGGCGATTGGGGCACACAATTCGGTATGCTGATTGCTCAT 3891 >seq29510 Length=3009 Score = 100 bits (110), Expect = 2e-15 Identities = 205/304 (67%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || |||||||| || || ||||| || ||||| | || | |||| ||| | | || Sbjct 2418 ACCAGACGATTGTCGAAGTCTTCGCCACCCAAATGTGTGTCGCCTGCCGTCGACTTGACC 2477 Query 518075 TGGAAAAGT---CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 | ||| | || || || | | || || || ||||| ||| || || |||| | Sbjct 2478 TCGAACAACGAACCCTCATCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCGCCCAAA 2537 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || ||||| || ||||| ||| | | | || ||||| || ||||| || || || Sbjct 2538 TCGAAAATGAGCACATTGCGCTCTCCCTTTAGATTCTTATCGAGGCCATAGGCCAAGGCG 2597 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 ||||||||||| || || || || | || ||||| | || ||||| || ||||| Sbjct 2598 GCAGCAGTTGGCTCGTTTATGATGCGCAGCACATTCAATCCCGCAATGGAGCCCGCATCC 2657 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | ||| || || || ||||| || || || || || |||||||| | Sbjct 2658 TTCGTTGCCTGACGTTGCGAGTCATTGAAATAGGCCGGCACTGTGATGACGGCATCCTTC 2717 Query 518312 ACTT 518315 |||| Sbjct 2718 ACTT 2721 >seq14510 Length=1304 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| || || ||||| || | || || || | || | |||||| ||||| |||||| Sbjct 402 TTGGCAGCGTCGCCAATTAGGCGCTCCGTGTCGTTGAAGGCAACATACGATGGTGTTGTG 461 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 ||||| || ||||| || ||||| ||||| || || | || ||||| ||||| || || Sbjct 462 CGATTGCCCTGATCGTTGGCAATGATTTCCACCTTGCTGTTCTGCCACACACCCACGCAG 521 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | || || || || || |||||||| ||| Sbjct 522 GAGTATGTGGTGCCCAAGTCGATACCAATTGCA 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778437157127302