Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7704 84.2 1e-11 seq2274 84.2 1e-11 >seq7704 Length=29863 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||||||||| || || || || | || |||| ||| Sbjct 18558 ACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCC 18499 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || ||||| || | || ||||| ||| | || | || || ||||| | Sbjct 18498 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 18439 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | ||| || || || | || ||||| || Sbjct 18438 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 18380 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || || || ||||||||||| Sbjct 18379 ACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq2274 Length=37031 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| ||||| | || |||| ||| Sbjct 30367 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCC 30308 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | ||||||||||| Sbjct 30307 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 30248 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| | ||| || || | ||| ||||| | Sbjct 30247 ATCTTGGCCTTGAC--ATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGGTCT 30190 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | ||||| || || |||||||| || Sbjct 30189 TGCCAGTCAAGGTCTTGACGAAAATCTGCATTTT 30156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324443424260376