Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2144 277 2e-69 seq19922 159 4e-34 >seq2144 Length=13752 Score = 277 bits (306), Expect = 2e-69 Identities = 1170/1848 (63%), Gaps = 32/1848 (2%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||||| ||| | ||| || | || || || | ||||||||| || Sbjct 4931 TTATCTACAGTAAACTGAATAGCATTGGCTGCCGGCTTAGTGCGAAGATAATACATTCCT 4872 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | ||| |||| ||||||| || || | ||| |||| | ||| Sbjct 4871 GTTTTAAGACCCGCTTTCCAGGAGAAGAAATGAATGGATGTCAGCTTACCATAATTTGGT 4812 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | | ||||||||||| |||||||| |||||||| || || || | ||| |||||| Sbjct 4811 TCAGCTACATGAATATTAAAGGATTGACTTTGATCAATGAAAGCTCCACGATCTGCTGCC 4752 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | || | ||| ||||| || || ||||| | || | | | Sbjct 4751 ATTTTGATTGTGGACTTTACGGATATTTCCCAAACGGTCTTATATAGTTCACGCACATTT 4692 Query 47214 TCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | || | || | ||||| || || || | || | || |||| ||||| | Sbjct 4691 TGAGGAATGTTTTCGATGTTTTGTATGGAGCCACGACTTGCGATTATTTGATTTTTCATA 4632 Query 47271 tcatttgacca-aagtt---ttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 |||| ||| |||| |||| | || | | | || | |||| |||| |||| Sbjct 4631 TCATCATCCCACAAGTCCAGTTCGGTTAGATCACGC----AACAAATGATGATTCACAAC 4576 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||||| |||||||| || |||| | | || || || || || ||||| | ||| Sbjct 4575 CTGAAACTCTCCAGACAGCACTCGTCTTGTGTAGATGTTTGAAGTGTAGGGTTCGAAAGA 4516 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||||||||| || | || || || || ||||| || ||||| | ||| | ||| || Sbjct 4515 TTCATTATTACCCATTATCTGGGCTGTCGATGCCGTTGGCATTGGTGCGA-TAAGCAGAG 4457 Query 47447 ATTT-CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC---CAATCCCAAAGAT 47502 | || | ||||| | || ||||| ||||| || ||||| |||| Sbjct 4456 AATTACGCACTCCGTGCTTGCTTATCTTCTCCTTGA---GTTTCGCCCAGTCCCAGAGAT 4400 Query 47503 CTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 || || || |||||| | |||||| || ||||| || || || | ||| || | Sbjct 4399 TTGTGGGTACCTTATTCCACATATCATACTGGAGAATACCCTTGCTAACTGGACTTCCCT 4340 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 ||| || | ||| | || | | | ||| || ||||| || ||||||||||| | || Sbjct 4339 CATAGGTCTCATACGTGCCATCTTTCTCAGCCAGCTCACAGCTGGCTTCCAATGCGCCAT 4280 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC--AAAAGG 47680 | || || ||||| ||||| | | || ||| | || || || | || | | || Sbjct 4279 AGTAAATGGTTTCGAATATCTGTTGATTCAGAAGACACGC--CTTATCACTCTCATAGGG 4222 Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 ||| || | |||||| | ||||||||| ||||| |||||||| | ||| Sbjct 4221 ATACCGCATTAAAATCAAAGCATCTGCAAGTCCTTGAACTCCAATTCCAATTGGACGATG 4162 Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 || || || || ||| || || | || || | || ||||| || || || || Sbjct 4161 TCTTAAGTTGGATTTCTTAGCCTCGGGCAGAGGGTAGTAATTGATATCGATGATCTTGTT 4102 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT 47860 | | ||| | | || ||| || || | || | Sbjct 4101 CAAGTTTTTGGTAACAATCTTGGTGACCTCTTTGAGCTTCACAAAGTCGTACGTCTTCTC 4042 Query 47861 ---TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 | | || ||| |||| || ||||| ||||| | ||| || ||||| | ||||| ||| Sbjct 4041 CGGTGTTACGAACATATTGAGAGCTATCGATGCCAAATTGCAAACAGCAATCTCATCTGG 3982 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || ||| | | ||||||| || | |||| ||||| || || |||| |||||| Sbjct 3981 TGCAGAATACTCAACAATTTCAGTGCACAAGTTACTGCATTTAATTGTGCCCACATTTTG 3922 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 || || | |||||| | |||||| | ||||| | ||||| ||||| || | Sbjct 3921 TTGGTTGCTCTTGCGGTTACACGAATCCTTGAAGAGCATGTACGGTGTGCCAGTCTCCAC 3862 Query 48038 CTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATT 48097 || || |||||||| | ||||| | |||||| |||||| | ||| | Sbjct 3861 TTGTGACTCAATGATGGCAAACCAAAGGGATTGAGCCTTGATAACACGATTTGCTCGACC 3802 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157 || | |||||||| ||||| | || |||||| | ||| || | |||| | | | || Sbjct 3801 CTCCTTCTCGTATTTTGTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCC 3742 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||||| | | || ||||||| |||||||||||||| || || | ||||||| Sbjct 3741 TGGACACTTGTGCGGGCACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAA 3682 Query 48218 TATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | |||||||||||| || || ||| || | ||||| || | |||| || |||||| Sbjct 3681 CAAATCTGGTATCCACAGGGC-ATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAG 3623 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 | ||| | ||||| || | || || | | ||| | |||||| || || | || || | Sbjct 3622 TGTTCTTCTTAAGATCCAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGG 3563 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | || |||| ||| || || ||||| | ||| | || ||||||| | | Sbjct 3562 CAAAAGCTCCAGGTCTTTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATA 3503 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||| | ||| || || | ||||| ||| |||||||||| || ||| || |||| Sbjct 3502 CTCTCAGCATAGGAACCAAGCCATTGGATGTACCATTGGTGCCACTAATCGAAGTTCCCT 3443 Query 48457 TAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | || | || | | | ||| | ||| ||||||||||| || || || | || Sbjct 3442 TGGCCCGAATGCAATGCACATT--CAGACCAATACCACCTGCTGACTTTGAGATCATCGC 3385 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 |||| | | | | | | | ||||| || || ||| || ||| | | ||||| Sbjct 3384 ACACTGCTCCACAGATTTAAAGATTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAAA 3325 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 || ||||| || || | ||| | | || | |||||| || ||||| | Sbjct 3324 GCATGAAGACAGCTGAGGGCGTGTGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATGTGT 3265 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 || | || || | ||| || || || || | | ||||| ||||| | ||| Sbjct 3264 GAAGAAGCGTTCCGAAAGCAAATTGTAAGTCTCCAGTGCGGAATCAATATCATCTCCATG 3205 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 |||||| || | || ||||| | ||| | || || | |||| ||| |||| ||| || Sbjct 3204 TATACCGATGGCAACTCGCATCAGCATGTGCTGTGGACGTTCAGCAACTTTGCCATTGAT 3145 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| || | ||| ||| ||||| || || || |||||||| || || Sbjct 3144 TTTTAACAAATACGATCGCTCCAAAGTCTTGAATCCAAAATAATTATA 3097 >seq19922 Length=1369 Score = 159 bits (176), Expect = 4e-34 Identities = 429/651 (66%), Gaps = 4/651 (1%) Strand=Plus/Minus Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || || ||||| || |||||||| ||||| || ||||| || || || || || || || Sbjct 1328 TTGACTGGTAGAGCGTCTGTAAGGAATTCCTGCTCTATCTTCACAGCATCCGAGATGATC 1269 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA-ACATGCAAA 18968 | | | || | | ||| | | || | || | ||||| | ||| ||||| Sbjct 1268 TCGATGATGCGCTCACGACTGGGACGCTGTACCAAGTGCTGGAACATAAGCACA-GCAAA 1210 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| ||||| ||||||||||| | |||| ||||| || || || | ||| ||||| Sbjct 1209 ATCGCAATGAAGTCCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCGGGCAT 1150 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || || | || || | |||||| || || ||||| || ||||| || ||||| Sbjct 1149 AAGACCACGCTTCTTCAGCCAGAAGATCGACGCAAAACTGCCGCTGAAGAAGATGCCTTC 1090 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATT 19147 || || ||||| |||| | | || ||| | | || | || | || ||||| Sbjct 1089 GACAGCAGCAAAGGCAATGATGCGCTCGCCAAAGTTTGCCGCCTTCG-AGGAGATCCAAG 1031 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||| |||||||| ||||| || ||| ||||| || || || | ||| || || | Sbjct 1030 ACAGAGCCCAATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAGAGGT 971 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | |||| || | ||| || || | || || | | ||||||||||| || | Sbjct 970 AGTCGCGCTGATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCCGAGT 911 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | | ||| || || || ||||| || || ||||| || | ||| ||||| || || |||| Sbjct 910 GGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTTGCACTT 851 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || | ||||| | ||| |||||||| || || ||| || ||||| || | Sbjct 850 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAAAGAAAG 791 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | || |||||| ||| || || |||| |||| | | ||| || | || | Sbjct 790 CCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGAGCCCAGTCGGTCATGT 731 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || |||| ||| ||||| || || ||||| || ||||| || || |||| Sbjct 730 CCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561771063953880