Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8229 239 4e-57 seq6504 105 5e-17 seq11225 95.1 1e-13 seq14110 93.3 3e-13 seq7704 86.0 5e-11 >seq8229 Length=8951 Score = 239 bits (264), Expect = 4e-57 Identities = 407/585 (70%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| ||||| || ||||| || ||||| ||||| | || |||| || Sbjct 6687 GCTGTCGGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTGTGTTCCAGCATGGCAAG 6628 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || |||||||| ||||| ||||| | || || ||||| |||||| | |||||| Sbjct 6627 GTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCGTATGTTGCCTTCACG 6568 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | ||| |||||||||| || || | || | | || || ||| | Sbjct 6567 GATACGGAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCGATGAACCCAACCCAA 6508 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || |||||||| ||| | ||||| | | || |||||||| |||| || | Sbjct 6507 ACGATCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATTCGGCTGTGCAATCC 6448 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| ||||||||| | |||| | ||| ||| || || | ||||| | | Sbjct 6447 GATATGAAGCACTGGCCTTTCGAGGTTGTCAGCGTTGATGGCAAGCCCAAAATTGAGGTT 6388 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || | |||||| | || | || | || || | || || || ||||| || | Sbjct 6387 ACGTA-CAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGTGTTGAC 6329 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 |||||||| | || ||| | | | ||| ||||| || || |||| || || | Sbjct 6328 CAAAATGAAGGAGACCGCC-GAGGCGTACCTGGGCAAGACTGTCACCAATGCTGTCATTA 6270 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| ||||| ||||| ||||| ||||| ||||| ||||| || |||||||| |||| Sbjct 6269 CTGTGCCAGCTTATTTCAATGATTCACAGCGTCAGGCTACCAAGGATGCTGGTACCATTG 6210 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || | ||||| | ||||| ||||| || || ||||| || || |||| ||||| | Sbjct 6209 CCGGTTTGAATGTGTTGCGTATCATCAACGAGCCAACTGCCGCGGCCATTGCTTATGGTC 6150 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT 550574 | || || | || | ||| | |||||| | |||||||||| Sbjct 6149 TGGACAAGAAGGCTGTTGGAGAGCGTAATGTGTTGATCTTTGATT 6105 >seq6504 Length=17104 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | | |||| ||| | ||||| || || || || || ||||| || ||||| ||||| Sbjct 5260 AGTCAAGAATGCTGTAGTCACTGTGCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTAC 5201 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 || |||||||| | ||||||||||| ||||| || ||| | ||||| || || ||||| Sbjct 5200 CAAGGATGCTGGTCAAATTGCTGGACTGAATGTGCTGCGTGTCATCAACGAGCCAACTGC 5141 Query 550510 TGCTGCACTTGCATATGG 550527 ||||| || || ||||| Sbjct 5140 AGCTGCTCTGGCTTATGG 5123 >seq11225 Length=4956 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 931169 AATTCCATTAATATTAGTTAAATCTGATGGAGGATTTACATATGATACCTCTGATTTAGC 931228 ||||||| | | | | |||||||||||||| ||||||||||||||||| || ||| || | Sbjct 3528 AATTCCACTGACAATCGTTAAATCTGATGGTGGATTTACATATGATACTTCAGATATAAC 3469 Query 931229 AGCCATTAAATATAGATTTATGGAACAAAAAGTAGATCGTGTAATTTATGTTGTGGATTC 931288 ||| |||| | ||| | |||| || | || | | | |||||||||||||| || Sbjct 3468 AGCGCTTAAGCAAAGAATAGAGGAAGAACATGTGAACTGGATTATTTATGTTGTGGACTC 3409 Query 931289 AGGTCAAAGT 931298 ||||||||| Sbjct 3408 TGGTCAAAGT 3399 >seq14110 Length=7795 Score = 93.3 bits (102), Expect = 3e-13 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716 || ||| |||| ||||| || || |||||||| ||| ||||||| |||| ||||| ||| Sbjct 7765 GTTTTAGTTGACTTTTCCTCTCCGAATATTGCAAAACTAATGCATGTTGGTCATTTACGT 7706 Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATA--TTGTGGAAGTAAAGTTC 930774 || || || ||||| || ||| | ||| | | ||| | || | | | | |||| Sbjct 7705 TCAACTATCATTGGCGAGTCTATCTGTCGCCTTCTTGAGTTCCTTCAGCACG--ATGTTC 7648 Query 930775 ATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||| | |||||| | ||||||||||| || ||||| |||||| | ||||| Sbjct 7647 TTCGCATTAATCATTTAGGTGATTGGGGCACTCAATTCGGTATGCTGATTGC 7596 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 931166 TGAAATTCCATTAATATTAGTTAAATCTGATGGAGGATTTACATATGATACCTCTGATTT 931225 || |||||| | | | | || ||||||||||| ||||| || |||||||| |||||| | Sbjct 6654 TGGAATTCCGCTGACAATTGTAAAATCTGATGGTGGATTCACGTATGATACTTCTGATAT 6595 Query 931226 AGCAGCCATTAAATATAGATTTATGGAACAAAAAGTAGATCGTGTAATTTATGTTGTGGA 931285 | ||||||||||| | ||| || ||| || || | | |||||||||||||||| Sbjct 6594 AACAGCCATTAAACAAAGAATTGAAGAAGAACTTGTCAACTGGATAATTTATGTTGTGGA 6535 Query 931286 TTCAGGTCAAAGT 931298 | || |||||| Sbjct 6534 CGCTGGCCAAAGT 6522 >seq7704 Length=29863 Score = 86.0 bits (94), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| |||||||| | ||||| | |||||| | ||| || || ||||| Sbjct 18540 TCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAG 18481 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | |||||||| ||||||||||||||||| || ||||| || ||| || Sbjct 18480 ATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTT 18421 Query 563404 TCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAA 563461 || || ||||| | || | || || ||||| | || ||||| || || ||||||| Sbjct 18420 TCGATGGTATCCGACGGTTCG-AC-CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAA 18363 Query 563462 CGAAAATTTGCAT 563474 |||| || ||||| Sbjct 18362 CGAAGATCTGCAT 18350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026754000257830