Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6480 127 2e-24 >seq6480 Length=6706 Score = 127 bits (140), Expect = 2e-24 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 29799 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 29858 ||| || || || || |||| | ||||| ||||| || |||| |||||| ||||| || Sbjct 794 CTTTAGTGGCTCTACATGATTCGAATAGACATGAGCATCGCCCAAGGTGTGCACAAAGTC 735 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 || |||| ||| ||||| || || |||||||| ||||| || | ||| || || Sbjct 734 ACCAGGTTTGTACCCAGTGACATGGGCGATCATGTAGGTGAGCAGTGCATAGGATGCAAT 675 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 ||||||||| || ||||| ||||||||| | | ||| || |||||||||||||| || Sbjct 674 GTTAAAGGGAACGCCGAGTCCCATGTCCGCACTGCGCTGATACAGCTGACACGAGAGTTC 615 Query 29979 TC--CGTCGCT----CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 | || || || |||||||| || | ||||||||| || |||||||| Sbjct 614 ACCACGAGACTGTGAGACATAAAACTGCGCCAGGCAGTGGCACGGCGGCAGAGCCAT 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408378225042191