Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7704 154 1e-32 seq102 104 2e-17 >seq7704 Length=29863 Score = 154 bits (170), Expect = 1e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || ||||| || || |||||||||| || ||| | | |||| ||||||||||| || Sbjct 18546 GTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATCTTCCAATTGCTTGCCA 18487 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||| ||||| || ||||| |||||||| || ||||| || ||| Sbjct 18486 GCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 18427 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || || |||| ||| || |||||||||| || || || || | ||| Sbjct 18426 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 18367 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || |||||||| || Sbjct 18366 TTAACGAAGATCTGCATCGT 18347 >seq102 Length=36553 Score = 104 bits (114), Expect = 2e-17 Identities = 191/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 ||||| || || || |||| | | ||||||| |||||| || ||| |||| |||||| Sbjct 12776 AATTTGCGCTTGCAGCCTTGATAGTTCATGTATCGTATCTTGCCAAAGATGTCGCGCTCC 12835 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGA 13774 ||||| | |||| ||| || | | |||||||||||| ||| | || || |||||| Sbjct 12836 TTCCAGCCCTGATCATGAACGCCACCAACTGACCACATGCAGCCGACGTACCCATTGGGA 12895 Query 13775 TCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGTA 13834 || |||||||||| ||||| || || |||| |||| || || ||| Sbjct 12896 TCCCGTCCATCCAGGCTGTACTTATCATTGAGTAGTATGCAGTACTCCAACGCCTGCTCG 12955 Query 13835 GGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGCATT 13894 || | || ||| || | ||||| || ||||| || || | || |||||||||| Sbjct 12956 GGAGTCTCAGTCCACTCGAGAATTTTCTTCGCCCAGTACATGCGCAGGAATCCGTGCATC 13015 Query 13895 TTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 ||||| | | | || || ||| |||| |||||||| Sbjct 13016 TTGCCCTCCCTGACCAGTTGCAACTGTGCAGAGTTCCACA 13055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396046253549919