Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq19922 141 2e-28
seq2144 129 1e-24
>seq19922
Length=1369
Score = 141 bits (156), Expect = 2e-28
Identities = 348/522 (67%), Gaps = 12/522 (2%)
Strand=Plus/Plus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||||| || || | ||||| ||||||||||| || |||| |||| | |
Sbjct 699 CTGGACCGTGGAGGAAGTGGATCTATCCAAGGACATGACCGACTGG---GCTCGACTAAC 755
Query 25572 AGAC---GAGCAGCATTT--TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGT 25626
|||| |||| || || | ||| | || ||||| |||||||| |||||||| ||
Sbjct 756 AGACAATGAGCGTCACTTCATTTCACAT--GTTTTGGCTTTCTTTGCCGCCTCTGACGGC 813
Query 25627 ATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAG 25686
|| || || |||||||| |||| | |||| | ||||||||| | |||||
Sbjct 814 ATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAAGTGCAAATCACAGAGGCACGT 873
Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746
|| || || || |||||||| ||||| || ||||| ||||| || |||| | |||
Sbjct 874 TGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAAATGTACAGCGTGCTC 933
Query 25747 CTGATGACGTACATTACAGACGTCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805
| || |||||| || ||| || | || || || |||||| ||
Sbjct 934 ATCGACACTTACATTCGGGATC-CGCATCAGCGCGACTACCTCTTCAATGCCATTGAAAC 992
Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865
|| ||| | ||| | ||||| ||||| || |||||| | || ||
Sbjct 993 GATGCCCGCTGTGAAGCGTAAGGCAGATTGGGCTCTGTCTTGGATCTCCTCGAAGGCGGC 1052
Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925
| ||||||||||| | | |||||||||||||| || |||||||| ||||||||
Sbjct 1053 AAACTTTGGCGAGCGCATCATTGCCTTTGCTGCTGTCGAAGGCATCTTCTTCAGCGGCAG 1112
Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985
|||||| | ||||||||||| ||| || || |||||||| || ||| || ||
Sbjct 1113 TTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCGAA 1172
Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027
||||| ||| | | |||||||| || || | ||||||||
Sbjct 1173 TGAGCTGATCTCCCGCGACGAGGGACTTCATTGCGATTTTGC 1214
>seq2144
Length=13752
Score = 129 bits (142), Expect = 1e-24
Identities = 230/333 (69%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGG 222000
||||||||| |||||||| ||||| | | || | || ||||||||| || |||||
Sbjct 3785 GTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCGGG 3726
Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060
|||||||| ||| | || ||| ||| || | || ||| || | || || |||||
Sbjct 3725 -CACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCCA 3667
Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120
||| || | || ||||| | | || || ||||| ||| |||| ||| | |||||
Sbjct 3666 CAGGGCATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAGTGTTCTTCTTAAGATC 3607
Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180
||| |||||||| | || | ||||| ||||| || || | ||| | ||| || ||||
Sbjct 3606 CAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCT 3547
Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240
||| ||||||||||||||| | ||| | ||| || | | || | || ||
Sbjct 3546 TTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGGAAC 3487
Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAAT 222273
|| || |||||| ||| |||||||| ||||
Sbjct 3486 CAAGCCATTGGATGTACCATTGGTGCCACTAAT 3454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928286715212480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |