Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19922 141 2e-28 seq2144 129 1e-24 >seq19922 Length=1369 Score = 141 bits (156), Expect = 2e-28 Identities = 348/522 (67%), Gaps = 12/522 (2%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| || || | ||||| ||||||||||| || |||| |||| | | Sbjct 699 CTGGACCGTGGAGGAAGTGGATCTATCCAAGGACATGACCGACTGG---GCTCGACTAAC 755 Query 25572 AGAC---GAGCAGCATTT--TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGT 25626 |||| |||| || || | ||| | || ||||| |||||||| |||||||| || Sbjct 756 AGACAATGAGCGTCACTTCATTTCACAT--GTTTTGGCTTTCTTTGCCGCCTCTGACGGC 813 Query 25627 ATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAG 25686 || || || |||||||| |||| | |||| | ||||||||| | ||||| Sbjct 814 ATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAAGTGCAAATCACAGAGGCACGT 873 Query 25687 TGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT 25746 || || || || |||||||| ||||| || ||||| ||||| || |||| | ||| Sbjct 874 TGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAAATGTACAGCGTGCTC 933 Query 25747 CTGATGACGTACATTACAGACGTCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 | || |||||| || ||| || | || || || |||||| || Sbjct 934 ATCGACACTTACATTCGGGATC-CGCATCAGCGCGACTACCTCTTCAATGCCATTGAAAC 992 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 || ||| | ||| | ||||| ||||| || |||||| | || || Sbjct 993 GATGCCCGCTGTGAAGCGTAAGGCAGATTGGGCTCTGTCTTGGATCTCCTCGAAGGCGGC 1052 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | ||||||||||| | | |||||||||||||| || |||||||| |||||||| Sbjct 1053 AAACTTTGGCGAGCGCATCATTGCCTTTGCTGCTGTCGAAGGCATCTTCTTCAGCGGCAG 1112 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 |||||| | ||||||||||| ||| || || |||||||| || ||| || || Sbjct 1113 TTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTTATGCCCGGTCTTACCTTCTCGAA 1172 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 ||||| ||| | | |||||||| || || | |||||||| Sbjct 1173 TGAGCTGATCTCCCGCGACGAGGGACTTCATTGCGATTTTGC 1214 >seq2144 Length=13752 Score = 129 bits (142), Expect = 1e-24 Identities = 230/333 (69%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGG 222000 ||||||||| |||||||| ||||| | | || | || ||||||||| || ||||| Sbjct 3785 GTATAGAGCTCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCGGG 3726 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||||| ||| | || ||| ||| || | || ||| || | || || ||||| Sbjct 3725 -CACATCAGTGACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCCA 3667 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 ||| || | || ||||| | | || || ||||| ||| |||| ||| | ||||| Sbjct 3666 CAGGGCATAGAACAGATCCCGAGCACGATGTTCCTCTTTGCCAGTGTTCTTCTTAAGATC 3607 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 ||| |||||||| | || | ||||| ||||| || || | ||| | ||| || |||| Sbjct 3606 CAAGAACTCAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCT 3547 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240 ||| ||||||||||||||| | ||| | ||| || | | || | || || Sbjct 3546 TTTGCCGCCACCCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGGAAC 3487 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAAT 222273 || || |||||| ||| |||||||| |||| Sbjct 3486 CAAGCCATTGGATGTACCATTGGTGCCACTAAT 3454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928286715212480