Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8229 239 3e-57 seq3378 131 1e-24 seq7704 120 2e-21 seq14510 91.5 1e-12 >seq8229 Length=8951 Score = 239 bits (264), Expect = 3e-57 Identities = 407/581 (70%), Gaps = 8/581 (1%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||||||||| || || || ||| ||||| | ||| | || |||| || || || Sbjct 6681 GGTATTGATTTGGGTACCACCTACTCCTGTGTGGGTGTGTTCCAGCATGGCAAGGTTGAG 6622 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||| || || |||||| | || || ||||| |||||| | || || || || Sbjct 6621 ATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCGTATGTTGCCTTCACGGATACG 6562 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | | | ||||| |||||||| || | || | || || || | || || Sbjct 6561 GAGCGTTTGATTGGTGATGCTGCCAAGAACCAGGTGGCGATGAACCCAACCCAAACGATC 6502 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || |||||||| | |||||||||| || || |||||| | |||| ||||| |||||| Sbjct 6501 TTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATTCGGCTGTGCAATCCGATATG 6442 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--TAC 474632 || |||||||| |||| | | |||| ||| || || | || || | | ||| Sbjct 6441 AAGCACTGGCCTTTCGAGGTTGTCAGCGTTGATGGCAAGCCCAAAATTGAGGTTACGTAC 6382 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 | | | | ||| | || | ||| ||| | | || || || ||||| || |||||| Sbjct 6381 AAGGATGAGAAGA-AGACCTTCTTCCCCG-AGGAGATCTCCTCCATGGTGTTGACCAAAA 6324 Query 474693 TGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGT 474750 |||| | ||||| ||| | || || || ||||| || || |||| || |||||||| Sbjct 6323 TGAAGGAGACCGCCGAGG-CGTACCTGGG-CAAGACTGTCACCAATGCTGTCATTACTGT 6266 Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810 ||||| ||||| |||||||| || ||||| || || || ||||| || | ||||| || Sbjct 6265 GCCAGCTTATTTCAATGATTCACAGCGTCAGGCTACCAAGGATGCTGGTACCATTGCCGG 6206 Query 474811 TCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGA 474870 | | ||||| || ||||| || || || ||||| || || || ||||||||||||| || Sbjct 6205 TTTGAATGTGTTGCGTATCATCAACGAGCCAACTGCCGCGGCCATTGCTTATGGTCTGGA 6146 Query 474871 TAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT 474911 ||||| ||| ||| ||||| || |||||||||| Sbjct 6145 CAAGAAGGCTGTTGGAGAGCGTAATGTGTTGATCTTTGATT 6105 >seq3378 Length=37840 Score = 131 bits (144), Expect = 1e-24 Identities = 370/559 (66%), Gaps = 11/559 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| || || || || || ||| || || | ||| | || | || || Sbjct 4049 GCCATCGGTATCGACTTGGGCACCACCTACTCGTGCGTTGGTGTCTTCCAGCACGGCAAG 3990 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||| ||||| || || | || || || ||||| | ||||| Sbjct 3989 GTGGAGATAATTGCCAACGACCAGGGCAACCGGACTACTCCCAGCTATGTGGCGTTTACA 3930 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | |||| | || ||||| ||||| || | |||| || ||||| || Sbjct 3929 GATTCAGAACGCTTGATCGGAGACGCTGCCAAGAACCAAGTGGCGATGAATCCAAAGAAC 3870 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 | | | || ||||| ||| | ||||||| || || ||||| || ||| | ||| Sbjct 3869 AGTGTGTTCGATGCCAAACGTCTGATTGGACGCAAGTTTGACGACTCCAAGATACAAGAC 3810 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627 || ||| || ||||| || |||||| | || | | | || || ||| | ||| | Sbjct 3809 GACATGAAGCACTGGCCCTTCAAGGTGGTCAACGATTGCGGCAAGCCAAAGATAAGTGTG 3750 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | | || | || ||| || | |||| | || || | || ||||||||| | Sbjct 3749 GAGTTCAAG--GGCGAAGAGAAGCGATTTGCCCCTGAGGAGATCAGTTCAATGGTGCTGA 3692 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACA--AGAAGTAACTGATGCAGTAA 474743 | || |||||| | || || ||| | || ||||| || || | | | ||||| || | Sbjct 3691 CAAAGATGAAAGAGACAGCCGAGG-CGTA-CTTGGGCACCAGCA-TCAGAGATGCTGTCA 3635 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || ||||| || || || || || || || | || ||||| |||||||| || | Sbjct 3634 TCACAGTTCCTGCCTACTTCAACGACTCACAGAGACAGGCAACCAAAGATGCCGGTGCCA 3575 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| || || || || | | ||||| |||||||| || ||||| || || ||||||| Sbjct 3574 TTGCTGGGCTGAACGTGCTGAGGATTATCAATGAACCCACGGCAGCAGCTCTAGCTTATG 3515 Query 474864 GTCTTGATAAGAATTCTGA 474882 |||| || ||||| ||||| Sbjct 3514 GTCTCGACAAGAA-TCTGA 3497 >seq7704 Length=29863 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || | || | ||| ||||| || || ||||| | ||||| Sbjct 18571 ACGAAGGCGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGT 18512 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | |||||| |||||||| || | ||| || ||||| ||||||||||| Sbjct 18511 GCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCC 18452 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| |||||||| ||||||| ||| || ||||| | || ||||| Sbjct 18451 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 18392 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| || |||||||| || || Sbjct 18391 AGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATCTG 18353 >seq14510 Length=1304 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||||||||||| || || || || || ||| || || | ||| ||||| || | || Sbjct 554 TGCAATTGGTATCGACTTGGGCACCACATACTCCTGCGTGGGTGTGTGGCAGAACAGCAA 495 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| |||||||| || || || ||| | ||||||||||| |||||| | || | Sbjct 494 GGTGGAAATCATTGCCAACGATCAGGGCAATCGCACAACACCATCGTATGTTGCCTTCAA 435 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || | || ||||| || ||||| || Sbjct 434 CGACACGGAGCGCCTAATTGGCGACGCTGCCAA 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266117373148916