Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_021221.1 Length=45781 Score E Sequences producing significant alignments: (Bits) Value seq14068 89.7 2e-13 >seq14068 Length=5400 Score = 89.7 bits (98), Expect = 2e-13 Identities = 181/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 1139 CCGAAGGGGGTCTATGGGCGTCTCGCTCCTCGTTCGGGGCTGGCGGTGAAACACTTTATC 1198 ||| |||| ||| || || | || || ||||| |||||||| || || |||| || Sbjct 3358 CCGGAGGGTTCCTACGGCCGAGTGGCCCCACGTTCTGGGCTGGCCGTAAAGAACTTCATT 3299 Query 1199 GATGTGGGGGCGGGCGTGATAGACGGCGACTATCGAGGCATCGTGTGCGTGCTGCTGTTT 1258 |||||||| || ||||| | |||| ||||| || |||| | || | || |||||||| Sbjct 3298 GATGTGGGTGCCGGCGTTGTGGACGAGGACTACCGCGGCAACCTGGGAGTCGTGCTGTTT 3239 Query 1259 AATTTCTCAGACAGCGATTACCACGTGCGGTGCGGCGATAGGGTCGTGCAATTGATTCTA 1318 || || |||| ||||| | ||| | |||||||| | ||| ||||| ||| Sbjct 3238 AACCATTCGGACACCGATTTTGAGGTGAAGCGCGGCGATCGCATCGCACAATTCATTTGC 3179 Query 1319 GAAAGACACCTGATTGCC-GATTTGCATGAGGTCGACCACCTGCGTCCGACCGAGCGCGG 1377 ||| | || || | || || ||| | ||||||| | ||| | || | ||| || Sbjct 3178 GAACG-CATCTTCTATCCAGAGTTGGAACAGGTCGATAAACTGGATGACACTGTGCGTGG 3120 Query 1378 CGACTCCGGTTTCGGTTCCACCGGCG 1403 || ||||||||||| || |||| Sbjct 3119 TGAAGGTGGTTTCGGTTCAACTGGCG 3094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146294048306322