Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2144 143 8e-29 seq15109 120 9e-22 seq985 100 8e-16 >seq2144 Length=13752 Score = 143 bits (158), Expect = 8e-29 Identities = 566/874 (65%), Gaps = 25/874 (3%) Strand=Plus/Minus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 ||||| |||| | ||| || || || || || ||| ||||| ||| |||||| || Sbjct 4130 GGGTAGTAATTGATATCGATGATCTTGTTCAAGTTTTTGGTAAC-AAT--CTTGGTGACC 4074 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| | |||||| |||| | || || ||| |||| |||||| ||| | || Sbjct 4073 TCTTTGAGCTTCACAAAGTCGTACGTCTTCTCCGGTGTTACGAACATATTGAGAGCTATC 4014 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCT--ACAATCTCACAGC 155649 || |||| ||| || || ||| |||| | | || || | || || ||||| ||| || Sbjct 4013 GATGCCAAATTGCAAACAGCAATCTCATC-TGGT-GCAGAATACTCAACAATTTCAGTGC 3956 Query 155650 ACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCAT 155709 ||| |||| | || || ||||| | ||| | ||||| || | |||||| | || Sbjct 3955 ACAAGTTACTGCATTTAATTGTGCCCACATTTTGTTGGTTGCTCTTGCGGTTACACGAAT 3896 Query 155710 CCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGA 155769 ||||| | || ||||| || || || ||||||| |||| || | || | ||| | Sbjct 3895 CCTTGAAGAGCATGTACGGTGTGCCAGTCTCCACTTGTGACTCAATGATGGCAAACCAAA 3836 Query 155770 GGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829 || | || || || || || || ||| ||| ||||| |||| ||| Sbjct 3835 GGGATTGAGCCTTGATAACACGATTTGCTCGACCCTCCTTCTCGTATTTTGTATAGAGC- 3777 Query 155830 TTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGC 155888 | | || | ||||| || |||| ||||| || ||||| | ||||| | ||| Sbjct 3776 TCCTCAAACTTATCACCCCAAACATCAGCGAGTCCTGGACACTTGTGCGGGCACATCAGT 3717 Query 155889 GACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAG 155948 |||||| | ||| | || |||| |||||| | ||| ||| | |||||| Sbjct 3716 GACCAATCCTCATTGGCTTCCACGCGCTTCATAAACAAATCTGGTATCCACAGGGCATAG 3657 Query 155949 AAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAATT 156006 || || |||| || | || ||||| | ||| ||| |||||| || || ||||| | Sbjct 3656 AACAGATCCCGAGCACGATGT-TCCTCTTTGCCAGTG-TTCTTCTTAAGATCCAAGAACT 3599 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC-- 156064 | | ||| | ||| ||||| || || || |||||| ||| || ||||| Sbjct 3598 CAAAGACATCGGAATGCCAAGGCTCGAGGTAAATGGCAAAAGCTCCAGGTCTTTTGCCGC 3539 Query 156065 -ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 ||||||||| ||||| || || || || || || | |||||||||| | |||| Sbjct 3538 CACCCTGATCCACATAACGTGCCACATTGTTAAATACTCTCAGCATAGGAACCAAGCCAT 3479 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGAACATTATGAATAT 156180 |||| || |||||||| || | ||| |||| || | |||| ||| | || Sbjct 3478 TGGATGTACCATTGGTGCCACTAAT---CGAAGTTCCCTTGGCCCGAATGCAATGCACAT 3422 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || ||||||||||||| | || || || || || | || |||| || || | Sbjct 3421 TCAGACCAATACCACCTGCTGACTTTGAGATCATCGCACACTGCTCCACAGATTTAAAGA 3362 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | || || || || ||| | |||| | || ||| |||| ||| | ||||| |||| Sbjct 3361 TTCCCTCGATTGAGTCAGATACCATGGTGAGGAGAAAGCATGAAGACAGCTGAGGGCGTG 3302 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 ||| |||| ||| ||||| |||| ||||| Sbjct 3301 TGGTTGCAGCTGCGAAAAGTGTTGGTGAGGCATG 3268 >seq15109 Length=15799 Score = 120 bits (132), Expect = 9e-22 Identities = 185/263 (70%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 || |||||| |||||| | |||||||||||| ||||||||| | || || ||||| Sbjct 10479 TCCTCCATAG-CTTGATGAGACGACGCTGAATGTAACCAGTTTCGGCGGTCTTCACAGCG 10421 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| ||||||||||||| |||||||| | | |||| || || Sbjct 10420 GTATCAATGAGACCCTCACGACCACCCATGGCATGGAAATAGAACTCTGAGGGAGTCAGA 10361 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||||| |||| || || || | | |||||| || ||| ||| | Sbjct 10360 CCGGCCAGATAGGAGTTCTCCACAAAGCCTCTGGACTCGGGACCATAATCGTCTTTGATG 10301 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || ||||| || | ||| | || || || ||||| || || ||||||||||| Sbjct 10300 AAATGCGGCAGAGTGCGCTTCCTGAATCCATACGGAATACGTTTGCCCTCAACGTTCTGT 10241 Query 302812 TGTCCCAGGCACGAAATCATCTG 302834 || |||| || | ||| | ||| Sbjct 10240 TGACCCACACAAGCAATAACCTG 10218 >seq985 Length=14438 Score = 100 bits (110), Expect = 8e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| ||||| || || ||||||||||| ||||| || ||| Sbjct 2239 TGGCCAATTGTCATACGAGATGGAATGGCGTGAGGATTGATGATAATGTCTGGAGCCAGG 2298 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTG 251957 || ||| |||||||||||||||| | || ||| ||| | || ||||||||||| Sbjct 2299 CCCTCACACGTGAAGGGCATATCCTCCT-GTCGATACTGTATACCGCACGTTCCCTTTTG 2357 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 ||||||||| || ||||| |||||||| || || ||| || | |||| Sbjct 2358 TCCGTGACGCGAGGCAAACTTGTCACCAATCTGTGGTATACGCACAGAGCGCACTCGAAT 2417 Query 252018 CTTACAGAAGTTGTAACCATCACCGTT 252044 ||| ||||| ||||| || || | ||| Sbjct 2418 CTTGCAGAACTTGTAGCCCTCGCTGTT 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470911168712579