Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq27305 141 1e-27
seq19922 102 1e-15
seq1361 98.7 1e-14
>seq27305
Length=8087
Score = 141 bits (156), Expect = 1e-27
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
||||||||||||||||||| || | ||||| ||| || | | || || ||| ||
Sbjct 5302 AGAAGCGCACCGACGACATAACGTCATGGGATGCGGACTTCCTCAAAGTTGATCAGGGCA 5243
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || || ||||| || || ||||||||| | ||||| ||| || ||||| ||
Sbjct 5242 CACTTTTCGAATTGATACTGGCGGCCAACTACTTGGACATTAAGGGCCTTCTCGAGCTGA 5183
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | ||||||||||||||||||| |||| | |||||||| || |||||||| |
Sbjct 5182 CCTGCAAGACCGTGGCCAACATGATCAAGGACAAGACTCCCGAGGACATTCGCAAGACGT 5123
Query 1592286 TTAACATCAAG 1592296
| |||||||||
Sbjct 5122 TCAACATCAAG 5112
>seq19922
Length=1369
Score = 102 bits (112), Expect = 1e-15
Identities = 167/238 (70%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||||| ||||| ||||| ||||||||||| |||||| | |||||| | ||
Sbjct 916 CCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTT 857
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| || |||| |||| || || | || ||||| || |||||||| |||||| |
Sbjct 856 GCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAA 797
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACACCCAGTGG 869809
| ||||||| || || || ||||| ||||| | ||| | || ||| |||||| |
Sbjct 796 AGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGA-GCCCAGTCG 738
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
|||| | || ||||| ||||| ||||||||| || || ||||||||||
Sbjct 737 GTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680
>seq1361
Length=8679
Score = 98.7 bits (108), Expect = 1e-14
Identities = 311/476 (65%), Gaps = 12/476 (3%)
Strand=Plus/Minus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
|||| ||| ||||||||||| || || || || || || ||||| | |||| || |
Sbjct 5653 AAGGTAAAGATCTTGCGCTGATCAACACCACCGAATTGTGCATCGACCTTCAGGTACTCC 5594
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281
|| || || |||||| || |||| ||||| | | || ||||| | | ||||
Sbjct 5593 TCATCCAGACCCTGCA-GACCGGGATAGAGTAGGCAAGAGAGCAGCGGAT---GCTCCAC 5538
Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCGGTGCGCACGTGCGCCGCG 1852336
|| ||||||||| |||| |||| || | || | || | | | | | || | |
Sbjct 5537 CTGCTTGACCACCTCAGCGCCGGCTTTCTTGGCATCATGAATGGTCACCAGGGAGCTGAG 5478
Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAAC 1852396
| ||| | ||| | | ||| | | | |||||| || |||| || |||
Sbjct 5477 CTT--GTACACGTCCAATGTGTACTCCTTGGAGAGCTGGTAATCACTGCCCTTGACGAAC 5420
Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTAC 1852456
| || | |||||||||| || ||| || ||||| |||||||| || ||||||
Sbjct 5419 TTCAGCTTGTCCAGCGGCACTCCAATGGATTGAAGCATCGCCTTGATCACATGCTCGTAG 5360
Query 1852457 CAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516
| | || | | | ||| ||| || | ||| ||| || | || ||| |||
Sbjct 5359 TACTGTGTGCGCAGCTGCAGCAGCGACCAAGGAGCCTTCATGTTATCCAAGTAGGCATGC 5300
Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576
| ||||| || ||||| | ||| ||| || |||| ||| |||||||| | ||| |
Sbjct 5299 AGATCGGCGAACAGGATGGTAACCTCACATCCTGCCTTGAGGAAGTCGGCAATCTTGGAC 5240
Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632
||||||||||||||| | | || || || ||||| | ||| |||||||| || ||
Sbjct 5239 ATGGGCACAAAGTAGGCGACATGTGGTTTCCCCGTTGTCGCTGTGCCCCAGTAGAT 5184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6103194596882239
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |