Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq27305 141 1e-27 seq19922 102 1e-15 seq1361 98.7 1e-14 >seq27305 Length=8087 Score = 141 bits (156), Expect = 1e-27 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||||||||| || | ||||| ||| || | | || || ||| || Sbjct 5302 AGAAGCGCACCGACGACATAACGTCATGGGATGCGGACTTCCTCAAAGTTGATCAGGGCA 5243 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || ||||| || || ||||||||| | ||||| ||| || ||||| || Sbjct 5242 CACTTTTCGAATTGATACTGGCGGCCAACTACTTGGACATTAAGGGCCTTCTCGAGCTGA 5183 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||||||||||||||||| |||| | |||||||| || |||||||| | Sbjct 5182 CCTGCAAGACCGTGGCCAACATGATCAAGGACAAGACTCCCGAGGACATTCGCAAGACGT 5123 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 5122 TCAACATCAAG 5112 >seq19922 Length=1369 Score = 102 bits (112), Expect = 1e-15 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||| ||||| ||||| ||||||||||| |||||| | |||||| | || Sbjct 916 CCGAGTGGACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCTGTGATTT 857 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || |||| |||| || || | || ||||| || |||||||| |||||| | Sbjct 856 GCACTTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCGTCAGAGGCGGCAA 797 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACACCCAGTGG 869809 | ||||||| || || || ||||| ||||| | ||| | || ||| |||||| | Sbjct 796 AGAAAGCCAAAACATGTGAAATGAAGTGACGCTCATTGTCTGTTAGTCGA-GCCCAGTCG 738 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 |||| | || ||||| ||||| ||||||||| || || |||||||||| Sbjct 737 GTCATGTCCTTGGATAGATCCACTTCCTCCACGGTCCAGAATGAAGCTTCGGCCTTTT 680 >seq1361 Length=8679 Score = 98.7 bits (108), Expect = 1e-14 Identities = 311/476 (65%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| ||| ||||||||||| || || || || || || ||||| | |||| || | Sbjct 5653 AAGGTAAAGATCTTGCGCTGATCAACACCACCGAATTGTGCATCGACCTTCAGGTACTCC 5594 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 || || || |||||| || |||| ||||| | | || ||||| | | |||| Sbjct 5593 TCATCCAGACCCTGCA-GACCGGGATAGAGTAGGCAAGAGAGCAGCGGAT---GCTCCAC 5538 Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCGGTGCGCACGTGCGCCGCG 1852336 || ||||||||| |||| |||| || | || | || | | | | | || | | Sbjct 5537 CTGCTTGACCACCTCAGCGCCGGCTTTCTTGGCATCATGAATGGTCACCAGGGAGCTGAG 5478 Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAAC 1852396 | ||| | ||| | | ||| | | | |||||| || |||| || ||| Sbjct 5477 CTT--GTACACGTCCAATGTGTACTCCTTGGAGAGCTGGTAATCACTGCCCTTGACGAAC 5420 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTAC 1852456 | || | |||||||||| || ||| || ||||| |||||||| || |||||| Sbjct 5419 TTCAGCTTGTCCAGCGGCACTCCAATGGATTGAAGCATCGCCTTGATCACATGCTCGTAG 5360 Query 1852457 CAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516 | | || | | | ||| ||| || | ||| ||| || | || ||| ||| Sbjct 5359 TACTGTGTGCGCAGCTGCAGCAGCGACCAAGGAGCCTTCATGTTATCCAAGTAGGCATGC 5300 Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576 | ||||| || ||||| | ||| ||| || |||| ||| |||||||| | ||| | Sbjct 5299 AGATCGGCGAACAGGATGGTAACCTCACATCCTGCCTTGAGGAAGTCGGCAATCTTGGAC 5240 Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632 ||||||||||||||| | | || || || ||||| | ||| |||||||| || || Sbjct 5239 ATGGGCACAAAGTAGGCGACATGTGGTTTCCCCGTTGTCGCTGTGCCCCAGTAGAT 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103194596882239