Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq42801 134 1e-26 seq34587 109 5e-19 >seq42801 Length=1186 Score = 134 bits (148), Expect = 1e-26 Identities = 378/572 (66%), Gaps = 19/572 (3%) Strand=Plus/Plus Query 29210 CTCGGTCGAGGAATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGA 29269 |||||| | || || ||||| ||||| || || |||||||| || || |||||||| Sbjct 4 CTCGGTGAAAGAGTTCCTGCAGACCTGGAAGTTCTTCGACGGCGTGGATATCGACTGGGA 63 Query 29270 ATTTCCGGGCGGTAAAGGCGCTAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACAC 29329 ||| |||||||| |||||||| ||||||| || |||| | || |||| || || Sbjct 64 ATTCCCGGGCGGCAAAGGCGCCAACCCGAATCTGGGCAGCCCTCAG---GACGGGGAAAC 120 Query 29330 GTATAACATTTTACTGAAGGAATTGCGCGCAATGCTGGATAAACTGCAATTGCAAACGGG 29389 ||| | | |||| ||| |||| || ||||||||| | ||| | |||| || Sbjct 121 TTATGTGCTGCTGATGAAAGAACTGCGGGCGATGCTGGATCAGCTGTCGGCGGAAACCGG 180 Query 29390 TAAAACGTATGAATTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAA 29449 | |||||| |||| ||| |||||| | ||| | ||||| || | ||| Sbjct 181 CCGCAAGTATGAGCTGACCTCCGCCATCAGCGCCGGCAAGGACAAGATCGACAAGGTGGC 240 Query 29450 ATACGACGTTGTGCAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGG 29509 |||| |||| | ||| | | | | | | || || || ||||| ||||| || | || Sbjct 241 ATACAACGTCGCGCAGATCTCGATGGTTCACATCTTCCTGATGAGCTACGACTTCTACGG 300 Query 29510 CGCAT--GGTC--AAACACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGA 29565 ||| | | || ||| ||| |||| |||| || | || | || ||| ||| Sbjct 301 CGCCTTCGATCTGAAAAACC----TGGGGCATCAGACCGCGCTGAATGCGCCGGCCGGGA 356 Query 29566 ATCCCAACGAGCTTTACAACACTGACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTG 29624 | || || |||| ||| | ||| ||| || |||| || | || ||||| Sbjct 357 AACCGGACACCGCCTACACCACGGTGAACGGCGTGAATGCGCT-GCTGGCGCAGGGCGTC 415 Query 29625 GACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGTGACC 29684 | ||| |||| || | || ||| ||||||||| |||||||||||||| || |||| | Sbjct 416 AAGCCGGGCAAGATCGTCGTCGGCACCGCCATGTATGGCCGCGGTTGGACCGGGGTGAAC 475 Query 29685 GGTTACGTCGGTGACAACTAT---TTTAAAGGCACAGCTGCCGGGCCCGTGACCGGCACT 29741 || ||| | | ||||| | || | ||||| || ||||||| || | ||||| Sbjct 476 GGCTAC--CAG-AACAACATTCCGTTCACCGGCACCGCCACCGGGCCGGTCAAAGGCACC 532 Query 29742 TGGGATGACGGAGTTGTCGACTATCGTCAAAT 29773 ||||| |||| | || ||||| || || || Sbjct 533 TGGGAGAACGGCATCGTGGACTACCGCCAGAT 564 >seq34587 Length=2265 Score = 109 bits (120), Expect = 5e-19 Identities = 107/136 (79%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| |||||| || || |||| ||||| || |||||||| || || ||| | || || Sbjct 2132 ATCGAACTGCGTCTGGGCTCCCAATTCGCAACCAAAGTACTTGGTTGGATAAGTTGCTGG 2191 Query 34497 ACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 ||||||| |||| | || | ||||| ||||||||| | ||| |||||||||||||| Sbjct 2192 GCGTCCAATGGCGCGT--GCTACTTCGGCCATGTTGACCAGGACGGTCTTGATGCCGTTA 2249 Query 34555 CCCTTTCCTTCGACCT 34570 ||||| || ||||||| Sbjct 2250 CCCTTGCCCTCGACCT 2265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGAT 34313 ||| || |||| ||||| ||||| || |||| | | || ||||| || ||| | Sbjct 1872 GCCATGGAAACCACATGCCTTGCATGATTGCGAGATGGTTTGATTCTTAGCCGAAACGGT 1931 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 | | || || || || ||||| |||||||| | |||||||||||| ||||| ||||| Sbjct 1932 TAAGTTCGTTTCAGGATTATCACACTCCGGACAGAGCACAAACTTGCGAATGAAGCCATC 1991 Query 34374 AAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| ||||| | ||| || || ||||| || || ||||| || ||||| Sbjct 1992 GAGCAGATCCTGCAGCTTGTTCACATCATGCGAGCCATTCACAATGAAACGCTCGTT 2048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412599750553031