Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq27305 143 4e-28 seq19922 143 4e-28 seq1361 118 2e-20 seq1210 100 5e-15 >seq27305 Length=8087 Score = 143 bits (158), Expect = 4e-28 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||||||||| || | ||||| || ||| | | || || || | Sbjct 5303 GAGAAGCGCACCGACGACATAACGTCATGGGATGCGGACTTCCTCAAAGTTGATCAGGGC 5244 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || ||||| || || ||||||||| | ||||| ||| ||| ||||| || Sbjct 5243 ACACTTTTCGAATTGATACTGGCGGCCAACTACTTGGACATTAAGGGCCTTCTCGAGCTG 5184 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||||||||||||| | ||||||| |||| | ||||||||||| |||||||| Sbjct 5183 ACCTGCAAGACCGTGGCCAACATGATCAAGGACAAGACTCCCGAGGACATTCGCAAGACG 5124 Query 2035746 TTTAACATCAAG 2035757 || ||||||||| Sbjct 5123 TTCAACATCAAG 5112 >seq19922 Length=1369 Score = 143 bits (158), Expect = 4e-28 Identities = 231/327 (71%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| || || ||| || |||||||| || || |||||| Sbjct 1196 CCCTCGTCGCGGGAGATCAGCTCATTCGAGAAGGTAAGACCGGGCATAAGACCACGCTTC 1137 Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || ||||| ||||| | | || |||||||| ||| |||||||| ||||| || ||||| Sbjct 1136 TTCAGCCAGAAGATCGACGCA-AAACTGCCGCTGAAGAAGATGCCTTCGACAGCAGCAAA 1078 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | || |||||| |||| | || ||| || | |||||| || ||||| Sbjct 1077 GGCAATGATGCGCTCGCCAAAGTTTGCC--GCCTTCGAGGA-GATCCAAGACAGAGCCCA 1021 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 |||||||| | |||| | ||||| ||| || ||||| ||||||| ||| || Sbjct 1020 ATCTGCCTTACGCTTCACAGCGGGCATCGTTTCAATGGCATTGAAGAGGTAGTCGCGCTG 961 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| ||| | ||| ||||||||||| | ||| | || ||||||| || || Sbjct 960 ATGCGGATCCCGAATGTAAGTGTCGATGAGCACGCTGTACATTTCCGAGTGGACATTCTC 901 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| |||||||||||||||||||| Sbjct 900 CATGGCAATCTGGAAGCCATAAAAGCA 874 >seq1361 Length=8679 Score = 118 bits (130), Expect = 2e-20 Identities = 345/523 (66%), Gaps = 14/523 (3%) Strand=Plus/Minus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA-AAGGCAAAGATCT 2411518 ||| |||||||| |||||||| | ||||| | | | || | |||| |||||||| Sbjct 5699 GTGAATGCGCTTCTCGTAGCCCAACTGCGGCAAATACTT-CTCGGAGAAGGTAAAGATCT 5641 Query 2411519 TGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCT 2411578 ||||||| || || || || || || ||||| | |||| || ||| || || ||| Sbjct 5640 TGCGCTGATCAACACCACCGAATTGTGCATCGACCTTCAGGTACTCCTCATCCAGACCCT 5581 Query 2411579 GCATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCT---TGACCACC 2411634 ||| || |||| |||| ||| |||| |||| | | |||| || |||||||| Sbjct 5580 GCA-GACCGGGATAGAGTAGGCAAGAGAGCAGCGGAT---GCTCCACCTGCTTGACCACC 5525 Query 2411635 TGGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGT 2411692 | ||| |||| || | || | || | |||||| | | | || | | || Sbjct 5524 TCAGCGCCGGCTTTCTTGGCATCATGA--ATGGTCACCAGGGAGCTGAGCTTGTACACGT 5467 Query 2411693 CGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCA 2411752 | | ||||| | | |||||||||| ||||| || || | || |||| Sbjct 5466 CCAATGTGTACTCCTTGGAGAGCTGGTAATCACTGCCCTTGACGAACTTCAGCTTGTCCA 5407 Query 2411753 GCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGT 2411812 |||| || |||||| || ||||| |||||||| || |||||| | | || Sbjct 5406 GCGGCACTCCAATGGATTGAAGCATCGCCTTGATCACATGCTCGTAGTACTGTGTGCGCA 5347 Query 2411813 GCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGA 2411872 ||| | || ||| || | ||| || || | || ||| |||| ||||| || | Sbjct 5346 GCTGCAGCAGCGACCAAGGAGCCTTCATGTTATCCAAGTAGGCATGCAGATCGGCGAACA 5287 Query 2411873 GGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGT 2411932 |||| | ||| |||||| |||| ||| |||||||| | || | ||||||||||||| Sbjct 5286 GGATGGTAACCTCACATCCTGCCTTGAGGAAGTCGGCAATCTTGGACATGGGCACAAAGT 5227 Query 2411933 AGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 || | | ||| || || ||||| | ||| |||||||| || || Sbjct 5226 AGGCGACATGTGGTTTCCCCGTTGTCGCTGTGCCCCAGTAGAT 5184 >seq1210 Length=4457 Score = 100 bits (110), Expect = 5e-15 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| |||||||| || |||||| |||||| ||| || ||| Sbjct 4092 TGTACTTGGTAACAGCCTTAGTACCCTCACTAACTGCGTGCTTGGCCAATTCACCAGGCA 4151 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || || || || ||||| | || || ||||||||| | Sbjct 4152 AGAGAAGACGTACAGCAGTTTGAATTTCGCGACTTGTAATTGTAGAGCGCTTGTTGTAGT 4211 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || |||||| | | ||||| || | || ||||| ||||| ||||| Sbjct 4212 GAGCCAAACGCGAGGCCTCTGCAGCAATGCGCTCAAAAATATCGTTTACAAAGCTGTTCA 4271 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| || || || || |||||||||||||||| Sbjct 4272 TGATACTCATCGCCTTAGATGAAATGCCAGTATCCGGATGAACTTGCTTGAGCACCTTGT 4331 Query 1485710 AAA 1485712 ||| Sbjct 4332 AAA 4334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911133293976413