Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2274 114 8e-21 seq7704 107 1e-18 seq355 89.7 3e-13 seq42801 84.2 1e-11 >seq2274 Length=37031 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 30370 AGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 30311 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 30310 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 30251 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| | ||| || || | ||| |||| Sbjct 30250 TGGATCTTGGCCTTGAC--ATTCTCAATGGTATCAGATGGCTCCACCTCCAAGGTGATGG 30193 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| || || |||||||| Sbjct 30192 TCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 30159 >seq7704 Length=29863 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||| ||| |||| || ||| ||||||||||| || || || || |||| |||| Sbjct 18561 AGCACCAAGTGCAATGTTGA-CTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCATC 18503 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| || || ||||||| || ||||| ||| | || | || || ||||| Sbjct 18502 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 18443 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||||| |||| || ||||| Sbjct 18442 CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGT 18383 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || ||||||||||| Sbjct 18382 CTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq355 Length=9390 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| |||||||| || | || |||| ||||| |||||||||||||| || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||| ||| | || | ||||||||||| | ||||| || || || || Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCAC--ATTCT 9273 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | || | || || || | || |||||||| || || | || || |||| Sbjct 9272 CAATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAA 9213 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 9212 AGATCTGCAT 9203 >seq42801 Length=1186 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 6034 TTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAG 6093 ||||| || || || ||||| || ||||||||||| ||||| ||||| |||||||||||| Sbjct 87 TTGGCGCCTTTGCCGCCCGGGAATTCCCAGTCGATATCCACGCCGTCGAAGAACTTCCAG 28 Query 6094 GTCTCCAGAAACTC 6107 |||| ||| ||||| Sbjct 27 GTCTGCAGGAACTC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325502003763473