Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8229 237 1e-56 seq14110 125 5e-23 seq11225 105 5e-17 seq3378 105 5e-17 seq29510 100 2e-15 seq14510 87.8 1e-11 >seq8229 Length=8951 Score = 237 bits (262), Expect = 1e-56 Identities = 570/858 (66%), Gaps = 6/858 (1%) Strand=Plus/Plus Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085 || ||||||| ||| || | ||||| ||| |||||||| || || || | ||| || Sbjct 5834 CCCTCGAACAGAGAGTCGATCTCAATGCTAGCCTGAGTCGACGACGACAGGGTACGCTTT 5893 Query 282086 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTG 282143 ||||| || || || || | || | || | || ||| ||| | ||| ||| Sbjct 5894 GCACGCTCGCAGGCAGTGCGCAGACGACGGAGAGCAC--GCTTGTTGGTGGTCAGATCCT 5951 Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 | || | || | |||||| || | ||| | || || |||||||| || ||||| | Sbjct 5952 TCTTGTGCTTGCGCTTGAACTCCTGTACAAAGTGAGTGACCAGACGATTGTCGAAATCCT 6011 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| ||||| | || | || | ||||| | | || | ||| | || || |||| | Sbjct 6012 CACCACCCAAATGGGTGTCACCGGCCGTAGATTTGACCTCGAAGATGCCGTCATCAATCG 6071 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 ||| || || ||||| ||| || || |||| |||||| || | ||||| ||| Sbjct 6072 ACAGAATAGAGACATCGAAGGTACCGCCGCCCAAATCAAAGATCAACACATTACGCTCTC 6131 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | || || || |||||||| |||| || || |||||||| || || || || | Sbjct 6132 CAACAGCCTTCTTGTCCAGACCATAAGCAATGGCCGCGGCAGTTGGCTCGTTGATGATAC 6191 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| ||||| | ||| ||||| | || ||||| || || || || | |||||||| | Sbjct 6192 GCAACACATTCAAACCGGCAATGGTACCAGCATCCTTGGTAGCCTGACGCTGTGAATCAT 6251 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503 | ||||| || || |||||||| || |||| || || || || | || || | Sbjct 6252 TGAAATAAGCTGGCACAGTAATGACAGCATTGGTGACAGTCTTGCCCAGGTACGCCTCGG 6311 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTG 282562 | || | |||||||| | || | ||| || || || | || || ||| | | ||| Sbjct 6312 CGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GAAGAAGGTCTTC 6370 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 |||| | || | || |||| | || || | |||| | | ||| | || Sbjct 6371 TTCTCATCCTTGTACGTAACCTCAATTTTGGGCTTGCCATCAACGCTGACAACCTCGAAA 6430 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| | |||||||| ||||| ||| |||| || | | |||||| | || Sbjct 6431 GGCCAGTGCTTCATATCGGATTGCACAGCCGAATCATCGAATTTGCGACCAATCAGACGC 6490 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || ||||| || || || | |||||| || | || | || | ||||| ||||| ||| Sbjct 6491 TTAGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGGTTCTTGGCAGCATCACCA 6550 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 |||| | | || || || || || | |||||| ||||| || || |||||||| ||||| Sbjct 6551 ATCAAACGCTCCGTATCCGTGAAGGCAACATACGATGGGGTGGTACGATTACCCTGATCG 6610 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 || ||||| || ||||| || |||| || | ||||| ||||| | || || || Sbjct 6611 TTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACACAGGAGTAGGTGGTACCC 6670 Query 282863 AAATCAATACCAATAGCA 282880 ||||||||||| | |||| Sbjct 6671 AAATCAATACCGACAGCA 6688 >seq14110 Length=7795 Score = 125 bits (138), Expect = 5e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || || | ||| ||||| |||||||| ||| ||||||| |||| |||||| | |||||| Sbjct 7759 GTTGACTTTTCCTCTCCGAATATTGCAAAACTAATGCATGTTGGTCATTTACGTTCAACT 7700 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 || ||||| || ||||| ||| | | | || | | ||||||||| ||| ||| Sbjct 7699 ATCATTGGCGAGTCTATCTGTCGCCTTCTTGAGTTCCTTCAGCACGATGTTCTTCGCATT 7640 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||||| | ||||||||||| ||||||||||||||| | ||||| Sbjct 7639 AATCATTTAGGTGATTGGGGCACTCAATTCGGTATGCTGATTGC 7596 >seq11225 Length=4956 Score = 105 bits (116), Expect = 5e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||| | || ||||| ||||| |||||| ||||||| |||| |||||| | |||||| Sbjct 4058 GTCGACTTCTCCTCTCCCAATATAGCTAAACAAATGCACGTTGGGCATTTACGTTCAACT 3999 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 || ||||| || || || ||| | | | || | |||||| ||| ||| || Sbjct 3998 ATCATTGGCGAGTCAATCTGTCGTCTTCTTGAGTTTCTCCAACACGACGTTCTTCGAATA 3939 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 |||||| | || |||||||| || |||||||||||| | |||||| || Sbjct 3938 AATCATTTAGGCGATTGGGGCACACAATTCGGTATGCTGATTGCTCAT 3891 >seq3378 Length=37840 Score = 105 bits (116), Expect = 5e-17 Identities = 181/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| |||||||| ||||| || |||||||| || || || ||||| || | || || || Sbjct 2693 GGCTGTCACATTGAGAATGCCGTTGGCATCTAAGTCGAAGGTGACATCCACTTTCGGCAC 2752 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | | || ||||| || || || ||| || |||||||| || || || || Sbjct 2753 ACCGCGAGGGGCTGGTGGAATGCCGGTCAGATTGAAAGTTCCCAGCACGTTGTTGTCCTT 2812 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | ||||| |||||||| | ||||| || || ||| ||| ||||||| || Sbjct 2813 GGTCAGCGCACGTTCGCCCTCGAACACCTGGATTGTTACGGCAGGTTGGTTATCTGCGTA 2872 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || ||| | || | ||| ||||| || |||| | ||||| | ||||| Sbjct 2873 CGTGGTGAATGTCTTCGACTGTTTGCAAGGTATGCGACTGTTACGCTCAATCAGCTTGGT 2932 Query 281665 CATAATACCACCAGCTGTTTCTA 281687 ||| | || ||||||||||||| Sbjct 2933 CATCACTCCGCCAGCTGTTTCTA 2955 >seq29510 Length=3009 Score = 100 bits (110), Expect = 2e-15 Identities = 205/304 (67%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || |||||||| || || ||||| || ||||| | || | |||| ||| | | || Sbjct 2418 ACCAGACGATTGTCGAAGTCTTCGCCACCCAAATGTGTGTCGCCTGCCGTCGACTTGACC 2477 Query 282242 TGGAAAAGT---CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 | ||| | || || || | | || || || ||||| ||| || || |||| | Sbjct 2478 TCGAACAACGAACCCTCATCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCGCCCAAA 2537 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || ||||| || ||||| ||| | | | || ||||| || ||||| || || || Sbjct 2538 TCGAAAATGAGCACATTGCGCTCTCCCTTTAGATTCTTATCGAGGCCATAGGCCAAGGCG 2597 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 ||||||||||| || || || || | || ||||| | || ||||| || ||||| Sbjct 2598 GCAGCAGTTGGCTCGTTTATGATGCGCAGCACATTCAATCCCGCAATGGAGCCCGCATCC 2657 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | ||| || || || ||||| || || || || || |||||||| | Sbjct 2658 TTCGTTGCCTGACGTTGCGAGTCATTGAAATAGGCCGGCACTGTGATGACGGCATCCTTC 2717 Query 282479 ACTT 282482 |||| Sbjct 2718 ACTT 2721 >seq14510 Length=1304 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 ||||| || || ||||| || | || || || | || | |||||| ||||| |||||| Sbjct 402 TTGGCAGCGTCGCCAATTAGGCGCTCCGTGTCGTTGAAGGCAACATACGATGGTGTTGTG 461 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 ||||| || ||||| || ||||| ||||| || || | || ||||| ||||| || || Sbjct 462 CGATTGCCCTGATCGTTGGCAATGATTTCCACCTTGCTGTTCTGCCACACACCCACGCAG 521 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | || || || || || |||||||| ||| Sbjct 522 GAGTATGTGGTGCCCAAGTCGATACCAATTGCA 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738270513431142