Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq8229 237 1e-56
seq14110 125 5e-23
seq11225 105 5e-17
seq3378 105 5e-17
seq29510 100 2e-15
seq14510 87.8 1e-11
>seq8229
Length=8951
Score = 237 bits (262), Expect = 1e-56
Identities = 570/858 (66%), Gaps = 6/858 (1%)
Strand=Plus/Plus
Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085
|| ||||||| ||| || | ||||| ||| |||||||| || || || | ||| ||
Sbjct 5834 CCCTCGAACAGAGAGTCGATCTCAATGCTAGCCTGAGTCGACGACGACAGGGTACGCTTT 5893
Query 282086 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTG 282143
||||| || || || || | || | || | || ||| ||| | ||| |||
Sbjct 5894 GCACGCTCGCAGGCAGTGCGCAGACGACGGAGAGCAC--GCTTGTTGGTGGTCAGATCCT 5951
Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203
| || | || | |||||| || | ||| | || || |||||||| || ||||| |
Sbjct 5952 TCTTGTGCTTGCGCTTGAACTCCTGTACAAAGTGAGTGACCAGACGATTGTCGAAATCCT 6011
Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263
|||| ||||| | || | || | ||||| | | || | ||| | || || |||| |
Sbjct 6012 CACCACCCAAATGGGTGTCACCGGCCGTAGATTTGACCTCGAAGATGCCGTCATCAATCG 6071
Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323
||| || || ||||| ||| || || |||| |||||| || | ||||| |||
Sbjct 6072 ACAGAATAGAGACATCGAAGGTACCGCCGCCCAAATCAAAGATCAACACATTACGCTCTC 6131
Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383
| || || || |||||||| |||| || || |||||||| || || || || |
Sbjct 6132 CAACAGCCTTCTTGTCCAGACCATAAGCAATGGCCGCGGCAGTTGGCTCGTTGATGATAC 6191
Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443
||| ||||| | ||| ||||| | || ||||| || || || || | |||||||| |
Sbjct 6192 GCAACACATTCAAACCGGCAATGGTACCAGCATCCTTGGTAGCCTGACGCTGTGAATCAT 6251
Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503
| ||||| || || |||||||| || |||| || || || || | || || |
Sbjct 6252 TGAAATAAGCTGGCACAGTAATGACAGCATTGGTGACAGTCTTGCCCAGGTACGCCTCGG 6311
Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTG 282562
| || | |||||||| | || | ||| || || || | || || ||| | | |||
Sbjct 6312 CGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GAAGAAGGTCTTC 6370
Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622
|||| | || | || |||| | || || | |||| | | ||| | ||
Sbjct 6371 TTCTCATCCTTGTACGTAACCTCAATTTTGGGCTTGCCATCAACGCTGACAACCTCGAAA 6430
Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682
||||| | |||||||| ||||| ||| |||| || | | |||||| | ||
Sbjct 6431 GGCCAGTGCTTCATATCGGATTGCACAGCCGAATCATCGAATTTGCGACCAATCAGACGC 6490
Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742
|| ||||| || || || | |||||| || | || | || | ||||| ||||| |||
Sbjct 6491 TTAGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGGTTCTTGGCAGCATCACCA 6550
Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802
|||| | | || || || || || | |||||| ||||| || || |||||||| |||||
Sbjct 6551 ATCAAACGCTCCGTATCCGTGAAGGCAACATACGATGGGGTGGTACGATTACCCTGATCG 6610
Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862
|| ||||| || ||||| || |||| || | ||||| ||||| | || || ||
Sbjct 6611 TTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACACAGGAGTAGGTGGTACCC 6670
Query 282863 AAATCAATACCAATAGCA 282880
||||||||||| | ||||
Sbjct 6671 AAATCAATACCGACAGCA 6688
>seq14110
Length=7795
Score = 125 bits (138), Expect = 5e-23
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185
|| || | ||| ||||| |||||||| ||| ||||||| |||| |||||| | ||||||
Sbjct 7759 GTTGACTTTTCCTCTCCGAATATTGCAAAACTAATGCATGTTGGTCATTTACGTTCAACT 7700
Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245
|| ||||| || ||||| ||| | | | || | | ||||||||| ||| |||
Sbjct 7699 ATCATTGGCGAGTCTATCTGTCGCCTTCTTGAGTTCCTTCAGCACGATGTTCTTCGCATT 7640
Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289
|||||| | ||||||||||| ||||||||||||||| | |||||
Sbjct 7639 AATCATTTAGGTGATTGGGGCACTCAATTCGGTATGCTGATTGC 7596
>seq11225
Length=4956
Score = 105 bits (116), Expect = 5e-17
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185
||||| | || ||||| ||||| |||||| ||||||| |||| |||||| | ||||||
Sbjct 4058 GTCGACTTCTCCTCTCCCAATATAGCTAAACAAATGCACGTTGGGCATTTACGTTCAACT 3999
Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245
|| ||||| || || || ||| | | | || | |||||| ||| ||| ||
Sbjct 3998 ATCATTGGCGAGTCAATCTGTCGTCTTCTTGAGTTTCTCCAACACGACGTTCTTCGAATA 3939
Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293
|||||| | || |||||||| || |||||||||||| | |||||| ||
Sbjct 3938 AATCATTTAGGCGATTGGGGCACACAATTCGGTATGCTGATTGCTCAT 3891
>seq3378
Length=37840
Score = 105 bits (116), Expect = 5e-17
Identities = 181/263 (69%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484
||| |||||||| ||||| || |||||||| || || || ||||| || | || || ||
Sbjct 2693 GGCTGTCACATTGAGAATGCCGTTGGCATCTAAGTCGAAGGTGACATCCACTTTCGGCAC 2752
Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544
|| | | || ||||| || || || ||| || |||||||| || || || ||
Sbjct 2753 ACCGCGAGGGGCTGGTGGAATGCCGGTCAGATTGAAAGTTCCCAGCACGTTGTTGTCCTT 2812
Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604
|| | ||||| |||||||| | ||||| || || ||| ||| ||||||| ||
Sbjct 2813 GGTCAGCGCACGTTCGCCCTCGAACACCTGGATTGTTACGGCAGGTTGGTTATCTGCGTA 2872
Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664
|| || ||| | || | ||| ||||| || |||| | ||||| | |||||
Sbjct 2873 CGTGGTGAATGTCTTCGACTGTTTGCAAGGTATGCGACTGTTACGCTCAATCAGCTTGGT 2932
Query 281665 CATAATACCACCAGCTGTTTCTA 281687
||| | || |||||||||||||
Sbjct 2933 CATCACTCCGCCAGCTGTTTCTA 2955
>seq29510
Length=3009
Score = 100 bits (110), Expect = 2e-15
Identities = 205/304 (67%), Gaps = 3/304 (1%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| |||||||| || || ||||| || ||||| | || | |||| ||| | | ||
Sbjct 2418 ACCAGACGATTGTCGAAGTCTTCGCCACCCAAATGTGTGTCGCCTGCCGTCGACTTGACC 2477
Query 282242 TGGAAAAGT---CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
| ||| | || || || | | || || || ||||| ||| || || |||| |
Sbjct 2478 TCGAACAACGAACCCTCATCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCGCCCAAA 2537
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
|| ||||| || ||||| ||| | | | || ||||| || ||||| || || ||
Sbjct 2538 TCGAAAATGAGCACATTGCGCTCTCCCTTTAGATTCTTATCGAGGCCATAGGCCAAGGCG 2597
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
||||||||||| || || || || | || ||||| | || ||||| || |||||
Sbjct 2598 GCAGCAGTTGGCTCGTTTATGATGCGCAGCACATTCAATCCCGCAATGGAGCCCGCATCC 2657
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| || || || | ||| || || || ||||| || || || || || |||||||| |
Sbjct 2658 TTCGTTGCCTGACGTTGCGAGTCATTGAAATAGGCCGGCACTGTGATGACGGCATCCTTC 2717
Query 282479 ACTT 282482
||||
Sbjct 2718 ACTT 2721
>seq14510
Length=1304
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787
||||| || || ||||| || | || || || | || | |||||| ||||| ||||||
Sbjct 402 TTGGCAGCGTCGCCAATTAGGCGCTCCGTGTCGTTGAAGGCAACATACGATGGTGTTGTG 461
Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847
||||| || ||||| || ||||| ||||| || || | || ||||| ||||| || ||
Sbjct 462 CGATTGCCCTGATCGTTGGCAATGATTTCCACCTTGCTGTTCTGCCACACACCCACGCAG 521
Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| || || || || || |||||||| |||
Sbjct 522 GAGTATGTGGTGCCCAAGTCGATACCAATTGCA 554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3738270513431142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |