Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04]
48,067 sequences; 123,674,749 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2274 158 2e-33
seq7704 145 1e-29
seq355 138 2e-27
seq102 89.7 1e-12
>seq2274
Length=37031
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||| || || ||||| || || || || ||||| || || || ||||
Sbjct 30387 TACCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAG 30328
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||| || || || || || ||||| ||||| || | || ||||||||||
Sbjct 30327 AAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 30268
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| || || ||||| || || ||||| ||||| |||||| || || |
Sbjct 30267 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCA 30208
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| ||||| || || |||||||| ||||| ||||| || || |||||||||
Sbjct 30207 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATT 30158
>seq7704
Length=29863
Score = 145 bits (160), Expect = 1e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||||| || || |||||||| || || ||||| || ||| | | ||
Sbjct 18564 CGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCA 18505
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | ||| || ||||||||||| | | || ||||||||||| |||||||| ||
Sbjct 18504 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 18445
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| ||||| |||||||| || ||||| ||||| || || | ||| ||
Sbjct 18444 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 18385
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | || || || || ||||||||
Sbjct 18384 GTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350
>seq355
Length=9390
Score = 138 bits (152), Expect = 2e-27
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| || || || || || ||| | | || || || || || ||||| || || ||
Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
|| | || |||||||| || || || ||||| ||||| || || || || ||||| |||
Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802
|| || || |||||| ||||||||||| || |||||||| ||||| || || |||||
Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211
Query 82803 ATCTGCATTATTATATTTTTCTACTAAA 82830
||||||||| || || ||||||| |||
Sbjct 9210 ATCTGCATT-TTCAATATTTCTACAAAA 9184
>seq102
Length=36553
Score = 89.7 bits (98), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTAT 198458
||||||||||| || || || || || ||||| || || || | || ||| ||
Sbjct 12996 ATGTACTGGGCGAAGAAAATTCTCGAGTGGACTGAGACTCCCGAGCAGGCGTTGGAGTAC 12937
Query 198459 AGTAT-CTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 198517
| || ||| || || |||||||| || || || |||||| || || ||||| ||
Sbjct 12936 TGCATACTA-CTCAATGATAAGTACAGCCTGGATGGACGGGATCCCAATGGGTACGTCGG 12878
Query 198518 TTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGG 198577
|| |||||||| || | || | ||||||| | ||||| || | || |||||
Sbjct 12877 CTGCATGTGGTCAGTTGGTGGCGTTCATGATCAGGGCTGGAAGGAGCGCGACATCTTTGG 12818
Query 198578 GAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATTT 198635
|||||| |||| ||||| ||| | || | ||| |||||||||||||| || |||
Sbjct 12817 CAAGATACGATACATGAACTATCAAGGCTGCAAGCGCAAATTTGATGTTGCCGCCTTT 12760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981222533434713
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |