Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zaprionus_20indianus_20[genbank_20GCA_5F001752445.1_202016-10-04] 48,067 sequences; 123,674,749 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2274 158 2e-33 seq7704 145 1e-29 seq355 138 2e-27 seq102 89.7 1e-12 >seq2274 Length=37031 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || || || ||||| || || || |||| Sbjct 30387 TACCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAG 30328 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || || || || ||||| ||||| || | || |||||||||| Sbjct 30327 AAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 30268 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| |||||| || || | Sbjct 30267 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCCA 30208 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| ||||| ||||| || || ||||||||| Sbjct 30207 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATT 30158 >seq7704 Length=29863 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || || |||||||| || || ||||| || ||| | | || Sbjct 18564 CGGAGCACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCA 18505 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || ||||||||||| | | || ||||||||||| |||||||| || Sbjct 18504 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTG 18445 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | ||| || Sbjct 18444 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 18385 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || |||||||| Sbjct 18384 GTCTTACCCGTGAGGGTTTTAACGAAGATCTGCAT 18350 >seq355 Length=9390 Score = 138 bits (152), Expect = 2e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || || || ||| | | || || || || || ||||| || || || Sbjct 9390 TTCTGGATGTTGTAGTCCGACAGAGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAAATG 9331 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 || | || |||||||| || || || ||||| ||||| || || || || ||||| ||| Sbjct 9330 AGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCA 9271 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || |||||| ||||||||||| || |||||||| ||||| || || ||||| Sbjct 9270 ATGGTGTCGGAAGGTTCAACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTCACAAAG 9211 Query 82803 ATCTGCATTATTATATTTTTCTACTAAA 82830 ||||||||| || || ||||||| ||| Sbjct 9210 ATCTGCATT-TTCAATATTTCTACAAAA 9184 >seq102 Length=36553 Score = 89.7 bits (98), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTAT 198458 ||||||||||| || || || || || ||||| || || || | || ||| || Sbjct 12996 ATGTACTGGGCGAAGAAAATTCTCGAGTGGACTGAGACTCCCGAGCAGGCGTTGGAGTAC 12937 Query 198459 AGTAT-CTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 198517 | || ||| || || |||||||| || || || |||||| || || ||||| || Sbjct 12936 TGCATACTA-CTCAATGATAAGTACAGCCTGGATGGACGGGATCCCAATGGGTACGTCGG 12878 Query 198518 TTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGG 198577 || |||||||| || | || | ||||||| | ||||| || | || ||||| Sbjct 12877 CTGCATGTGGTCAGTTGGTGGCGTTCATGATCAGGGCTGGAAGGAGCGCGACATCTTTGG 12818 Query 198578 GAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATTT 198635 |||||| |||| ||||| ||| | || | ||| |||||||||||||| || ||| Sbjct 12817 CAAGATACGATACATGAACTATCAAGGCTGCAAGCGCAAATTTGATGTTGCCGCCTTT 12760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981222533434713